Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 VTA1P1-201ENST00000414044 866 ntBASIC4.24□□□□□ -1.73
SIX2Q9NPC8 AL449283.1-202ENST00000418249 604 ntBASIC4.24□□□□□ -1.73
SIX2Q9NPC8 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC4.24□□□□□ -1.73
SIX2Q9NPC8 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC4.24□□□□□ -1.73
SIX2Q9NPC8 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.24□□□□□ -1.73
SIX2Q9NPC8 AC092648.1-201ENST00000425870 423 ntBASIC4.24□□□□□ -1.73
SIX2Q9NPC8 HIGD1AP4-201ENST00000430194 280 ntBASIC4.24□□□□□ -1.73
SIX2Q9NPC8 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.24□□□□□ -1.73
SIX2Q9NPC8 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC4.24□□□□□ -1.73
SIX2Q9NPC8 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC4.24□□□□□ -1.73
SIX2Q9NPC8 AC104306.1-201ENST00000449702 371 ntBASIC4.24□□□□□ -1.73
SIX2Q9NPC8 OR51B8P-201ENST00000449892 769 ntBASIC4.24□□□□□ -1.73
SIX2Q9NPC8 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC4.24□□□□□ -1.73
SIX2Q9NPC8 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC4.24□□□□□ -1.73
SIX2Q9NPC8 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.24□□□□□ -1.73
SIX2Q9NPC8 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.24□□□□□ -1.73
SIX2Q9NPC8 AC021146.5-201ENST00000503544 545 ntBASIC4.24□□□□□ -1.73
SIX2Q9NPC8 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC4.24□□□□□ -1.73
SIX2Q9NPC8 RNA5SP179-201ENST00000517284 121 ntBASIC4.24□□□□□ -1.73
SIX2Q9NPC8 NDUFA5P2-201ENST00000519723 344 ntBASIC4.24□□□□□ -1.73
SIX2Q9NPC8 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC4.24□□□□□ -1.73
SIX2Q9NPC8 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC4.24□□□□□ -1.73
SIX2Q9NPC8 OR8I1P-201ENST00000529291 931 ntBASIC4.24□□□□□ -1.73
SIX2Q9NPC8 AC087897.1-201ENST00000550134 156 ntBASIC4.24□□□□□ -1.73
SIX2Q9NPC8 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC4.24□□□□□ -1.73
SIX2Q9NPC8 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC4.24□□□□□ -1.73
SIX2Q9NPC8 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC4.24□□□□□ -1.73
SIX2Q9NPC8 SS18L2P2-201ENST00000583960 235 ntBASIC4.24□□□□□ -1.73
SIX2Q9NPC8 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC4.24□□□□□ -1.73
SIX2Q9NPC8 AC234772.3-201ENST00000602277 528 ntBASIC4.24□□□□□ -1.73
SIX2Q9NPC8 AC096586.1-201ENST00000610267 561 ntBASIC4.24□□□□□ -1.73
SIX2Q9NPC8 AC009159.2-201ENST00000617603 606 ntBASIC4.24□□□□□ -1.73
SIX2Q9NPC8 AC073530.2-201ENST00000623987 261 ntBASIC4.24□□□□□ -1.73
SIX2Q9NPC8 MIR492-201ENST00000638676 116 ntBASIC4.24□□□□□ -1.73
SIX2Q9NPC8 RLIMP1-201ENST00000339626 1680 ntBASIC4.24□□□□□ -1.73
SIX2Q9NPC8 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
SIX2Q9NPC8 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
SIX2Q9NPC8 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC4.24□□□□□ -1.73
SIX2Q9NPC8 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SIX2Q9NPC8 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SIX2Q9NPC8 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.23□□□□□ -1.73
SIX2Q9NPC8 AP000756.2-201ENST00000624168 2567 ntBASIC4.23□□□□□ -1.73
SIX2Q9NPC8 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC4.23□□□□□ -1.73
SIX2Q9NPC8 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SIX2Q9NPC8 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.23□□□□□ -1.73
SIX2Q9NPC8 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SIX2Q9NPC8 AL121657.1-201ENST00000327215 531 ntBASIC4.23□□□□□ -1.73
SIX2Q9NPC8 RNU6-236P-201ENST00000363886 106 ntBASIC4.23□□□□□ -1.73
SIX2Q9NPC8 AL136131.1-201ENST00000406079 803 ntBASIC4.23□□□□□ -1.73
SIX2Q9NPC8 HMGB3P18-201ENST00000406327 590 ntBASIC4.23□□□□□ -1.73
SIX2Q9NPC8 RNU4-6P-201ENST00000410804 122 ntBASIC4.23□□□□□ -1.73
SIX2Q9NPC8 RPL7AP73-201ENST00000413490 353 ntBASIC4.23□□□□□ -1.73
SIX2Q9NPC8 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SIX2Q9NPC8 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC4.23□□□□□ -1.73
SIX2Q9NPC8 USP9YP24-201ENST00000434374 697 ntBASIC4.23□□□□□ -1.73
SIX2Q9NPC8 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC4.23□□□□□ -1.73
SIX2Q9NPC8 USP9YP17-201ENST00000444617 696 ntBASIC4.23□□□□□ -1.73
SIX2Q9NPC8 RANP8-201ENST00000444720 713 ntBASIC4.23□□□□□ -1.73
SIX2Q9NPC8 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
SIX2Q9NPC8 RPL7P19-201ENST00000469948 618 ntBASIC4.23□□□□□ -1.73
SIX2Q9NPC8 RPL23AP71-201ENST00000470966 469 ntBASIC4.23□□□□□ -1.73
SIX2Q9NPC8 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC4.23□□□□□ -1.73
SIX2Q9NPC8 BTF3L4P4-201ENST00000506381 449 ntBASIC4.23□□□□□ -1.73
SIX2Q9NPC8 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC4.23□□□□□ -1.73
SIX2Q9NPC8 PRELID3BP5-201ENST00000508612 460 ntBASIC4.23□□□□□ -1.73
SIX2Q9NPC8 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.23□□□□□ -1.73
SIX2Q9NPC8 LRRC34P1-201ENST00000542742 915 ntBASIC4.23□□□□□ -1.73
SIX2Q9NPC8 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC4.23□□□□□ -1.73
SIX2Q9NPC8 AC090877.1-201ENST00000561418 344 ntBASIC4.23□□□□□ -1.73
SIX2Q9NPC8 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.23□□□□□ -1.73
SIX2Q9NPC8 AL591034.3-201ENST00000605511 685 ntBASIC4.23□□□□□ -1.73
SIX2Q9NPC8 AC024060.1-201ENST00000607052 494 ntBASIC4.23□□□□□ -1.73
SIX2Q9NPC8 PART1_2.1-201ENST00000612397 250 ntBASIC4.23□□□□□ -1.73
SIX2Q9NPC8 AL591424.2-201ENST00000617023 128 ntBASIC4.23□□□□□ -1.73
SIX2Q9NPC8 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC4.23□□□□□ -1.73
SIX2Q9NPC8 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC4.23□□□□□ -1.73
SIX2Q9NPC8 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.23□□□□□ -1.73
SIX2Q9NPC8 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
SIX2Q9NPC8 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.23□□□□□ -1.73
SIX2Q9NPC8 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
SIX2Q9NPC8 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.23□□□□□ -1.73
SIX2Q9NPC8 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SIX2Q9NPC8 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC4.23□□□□□ -1.73
SIX2Q9NPC8 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
SIX2Q9NPC8 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC4.22□□□□□ -1.73
SIX2Q9NPC8 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.22□□□□□ -1.73
SIX2Q9NPC8 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SIX2Q9NPC8 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SIX2Q9NPC8 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC4.22□□□□□ -1.73
SIX2Q9NPC8 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SIX2Q9NPC8 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SIX2Q9NPC8 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SIX2Q9NPC8 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SIX2Q9NPC8 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
SIX2Q9NPC8 RNU4-44P-201ENST00000363050 141 ntBASIC4.22□□□□□ -1.73
SIX2Q9NPC8 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC4.22□□□□□ -1.73
SIX2Q9NPC8 RNU6-906P-201ENST00000384700 70 ntBASIC4.22□□□□□ -1.73
SIX2Q9NPC8 MIR320B1-201ENST00000390209 79 ntBASIC4.22□□□□□ -1.73
SIX2Q9NPC8 RNU2-22P-201ENST00000411266 212 ntBASIC4.22□□□□□ -1.73
SIX2Q9NPC8 AC013404.1-201ENST00000413068 249 ntBASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms