Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 RNA5SP500-201ENST00000364486 119 ntBASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 CCNG1P1-201ENST00000406783 885 ntBASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 RNU4-55P-201ENST00000410731 137 ntBASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 AC127526.1-201ENST00000417526 366 ntBASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 BX323845.3-201ENST00000428215 527 ntBASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 AC073464.1-201ENST00000429823 534 ntBASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 RPL31P35-201ENST00000431058 377 ntBASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 PPIAP3-201ENST00000450588 505 ntBASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 FABP3P2-201ENST00000453169 399 ntBASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 AC007182.2-201ENST00000489251 402 ntBASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 THAP6-203ENST00000502620 582 ntTSL 3 BASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 AL606834.2-201ENST00000602954 668 ntBASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 AL031176.1-201ENST00000604554 466 ntBASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 AF250324.2-201ENST00000608299 610 ntBASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 AP005431.1-201ENST00000618479 319 ntBASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 AL732618.1-201ENST00000623251 301 ntBASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC6.52□□□□□ -1.37
TRAIPQ9BWF2 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 ATP5A1P4-201ENST00000556888 1605 ntBASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 AC090229.1-201ENST00000590983 1609 ntBASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 MIR375-201ENST00000362103 64 ntBASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 RNU4-12P-201ENST00000365233 139 ntBASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 RPA3-203ENST00000401447 414 ntTSL 3 BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 AMMECR1LP1-201ENST00000415152 841 ntBASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 TEX41-204ENST00000423031 491 ntTSL 4 BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 AL445928.1-201ENST00000435545 222 ntBASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 AL451074.3-201ENST00000437709 472 ntBASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 AL049734.2-201ENST00000441066 616 ntBASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 RPS7P3-201ENST00000443360 580 ntBASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 OR7E125P-201ENST00000443450 846 ntBASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 RGS5-217ENST00000451759 835 ntTSL 3 BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 AC104308.1-201ENST00000454621 333 ntBASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 AL445687.2-201ENST00000458156 728 ntBASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 RPS17P15-201ENST00000475609 349 ntBASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 AL590282.1-201ENST00000610379 1136 ntBASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 AC009268.2-201ENST00000621925 457 ntBASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 AC104118.1-201ENST00000607625 1589 ntBASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC6.51□□□□□ -1.37
TRAIPQ9BWF2 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 ACTR3BP2-202ENST00000623630 1338 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 AL731532.1-201ENST00000623972 4236 ntBASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC6.5□□□□□ -1.37
TRAIPQ9BWF2 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms