Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 AL136164.3-201ENST00000624429 3978 ntBASIC3.85□□□□□ -1.79
SSX3Q99909 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
SSX3Q99909 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
SSX3Q99909 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC3.84□□□□□ -1.79
SSX3Q99909 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
SSX3Q99909 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC3.84□□□□□ -1.79
SSX3Q99909 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.84□□□□□ -1.79
SSX3Q99909 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
SSX3Q99909 AC079741.1-201ENST00000321498 212 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.84□□□□□ -1.79
SSX3Q99909 MIR16-1-201ENST00000385271 89 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
SSX3Q99909 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
SSX3Q99909 RNU1-82P-201ENST00000390851 165 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 RN7SKP106-201ENST00000410832 272 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 OR51A3P-201ENST00000413596 924 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC3.84□□□□□ -1.79
SSX3Q99909 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC3.84□□□□□ -1.79
SSX3Q99909 AL354692.1-201ENST00000423044 315 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 RGS17P1-201ENST00000423358 553 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 AC010881.1-201ENST00000433830 235 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 PPIAP17-201ENST00000438507 471 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC3.84□□□□□ -1.79
SSX3Q99909 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC3.84□□□□□ -1.79
SSX3Q99909 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC3.84□□□□□ -1.79
SSX3Q99909 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC3.84□□□□□ -1.79
SSX3Q99909 NPM1P49-201ENST00000448027 714 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 AL513533.1-201ENST00000453728 415 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC3.84□□□□□ -1.79
SSX3Q99909 RPS29P33-201ENST00000456717 146 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 AC010326.1-201ENST00000462726 602 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 RN7SL354P-201ENST00000469282 294 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 RAD51AP1P1-201ENST00000484195 1001 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 SCARNA22-201ENST00000503991 125 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC3.84□□□□□ -1.79
SSX3Q99909 AC091868.1-201ENST00000508746 304 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 AC002456.2-201ENST00000509356 380 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 AC005798.1-201ENST00000513715 387 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 RNU6-488P-201ENST00000515918 99 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC3.84□□□□□ -1.79
SSX3Q99909 AC104417.1-201ENST00000523974 751 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 OSBPL9P2-201ENST00000526582 1228 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.84□□□□□ -1.79
SSX3Q99909 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC3.84□□□□□ -1.79
SSX3Q99909 AC107016.1-201ENST00000550463 337 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC3.84□□□□□ -1.79
SSX3Q99909 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC3.84□□□□□ -1.79
SSX3Q99909 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC3.84□□□□□ -1.79
SSX3Q99909 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
SSX3Q99909 YWHAZP1-201ENST00000556286 722 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC3.84□□□□□ -1.79
SSX3Q99909 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC3.84□□□□□ -1.79
SSX3Q99909 AGGF1P8-201ENST00000562979 1000 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 AC010928.3-201ENST00000587712 541 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 AP001542.2-201ENST00000593141 364 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 AC020914.4-201ENST00000597690 277 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 RPAP2P1-201ENST00000603626 1168 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 IGKV1OR2-9-201ENST00000603957 287 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 IGKV1OR2-11-201ENST00000604120 287 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 Z82195.1-201ENST00000604558 398 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 AL158050.2-201ENST00000605336 568 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 AP004247.3-201ENST00000608682 624 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 AC093673.2-201ENST00000609674 331 ntBASIC3.84□□□□□ -1.79
SSX3Q99909 LDHA-225ENST00000625635 141 ntTSL 5 BASIC3.84□□□□□ -1.79
SSX3Q99909 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
SSX3Q99909 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.84□□□□□ -1.79
SSX3Q99909 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
SSX3Q99909 AC097504.1-201ENST00000515103 2415 ntBASIC3.84□□□□□ -1.8
SSX3Q99909 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
SSX3Q99909 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
SSX3Q99909 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.8
SSX3Q99909 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.84□□□□□ -1.8
SSX3Q99909 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
SSX3Q99909 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
SSX3Q99909 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC3.84□□□□□ -1.8
SSX3Q99909 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC3.84□□□□□ -1.8
SSX3Q99909 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC3.84□□□□□ -1.8
SSX3Q99909 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
SSX3Q99909 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.83□□□□□ -1.8
SSX3Q99909 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC3.83□□□□□ -1.8
SSX3Q99909 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.83□□□□□ -1.8
SSX3Q99909 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
SSX3Q99909 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
SSX3Q99909 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
SSX3Q99909 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
SSX3Q99909 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.83□□□□□ -1.8
SSX3Q99909 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
SSX3Q99909 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
SSX3Q99909 UBE2Q2P1-202ENST00000354771 883 ntBASIC3.83□□□□□ -1.8
SSX3Q99909 RNU6-236P-201ENST00000363886 106 ntBASIC3.83□□□□□ -1.8
SSX3Q99909 RNA5SP505-201ENST00000364748 108 ntBASIC3.83□□□□□ -1.8
SSX3Q99909 OR1L1-202ENST00000373686 1083 ntBASIC3.83□□□□□ -1.8
SSX3Q99909 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
SSX3Q99909 SNORA56-201ENST00000383966 129 ntBASIC3.83□□□□□ -1.8
SSX3Q99909 MTCO2P31-201ENST00000402702 684 ntBASIC3.83□□□□□ -1.8
SSX3Q99909 AL138878.1-201ENST00000405131 347 ntBASIC3.83□□□□□ -1.8
SSX3Q99909 AC069218.2-201ENST00000411665 344 ntBASIC3.83□□□□□ -1.8
SSX3Q99909 AL591848.1-201ENST00000413092 322 ntBASIC3.83□□□□□ -1.8
SSX3Q99909 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.83□□□□□ -1.8
SSX3Q99909 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 172.3 ms