Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 AC007114.2-201ENST00000576014 4281 ntBASIC4.92□□□□□ -1.62
CCDC140Q96MF4 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC140Q96MF4 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 MTND4P35-201ENST00000604257 1375 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 AC006511.3-201ENST00000624929 1783 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 GUCY1B2-204ENST00000531898 1979 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 PARP4P2-201ENST00000446672 3326 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 AL022323.4-201ENST00000623980 13120 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 HSPE1P11-201ENST00000339579 310 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 RNU6-511P-201ENST00000363496 107 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 RNU6-510P-201ENST00000391239 108 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 GGA1-205ENST00000405147 575 ntTSL 4 BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 AC099535.1-201ENST00000408928 371 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 RNU2-36P-201ENST00000410361 191 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 RN7SKP29-201ENST00000410957 272 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 MED13P1-201ENST00000428342 171 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 AC064862.5-201ENST00000440618 334 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 RPL5P25-201ENST00000441148 775 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 AC007677.1-201ENST00000445757 515 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 MTND1P18-201ENST00000448191 573 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 AC099670.1-201ENST00000455141 783 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 RNU7-182P-201ENST00000459009 62 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 RPL7L1P8-201ENST00000469911 741 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 RN7SL369P-201ENST00000477138 299 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 SNRPCP11-201ENST00000492453 205 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 AC103851.1-201ENST00000506833 274 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 RNU4-29P-201ENST00000515943 174 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 AC105029.1-201ENST00000520250 669 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 IGHV4-55-201ENST00000520889 368 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 HPRT1P3-201ENST00000539521 576 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 AC090022.1-201ENST00000546569 311 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 AC011611.1-201ENST00000552179 197 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 AC244034.2-201ENST00000562504 509 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 AC005668.1-201ENST00000571142 476 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 AC007687.1-201ENST00000602704 304 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 AC130324.3-201ENST00000614165 542 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 ATM-228ENST00000639240 498 ntTSL 5 BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 ATM-230ENST00000640388 578 ntTSL 5 BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 AC092692.1-201ENST00000623625 2595 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 NXPH1-205ENST00000602349 1953 ntBASIC4.91□□□□□ -1.62
CCDC140Q96MF4 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
CCDC140Q96MF4 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
CCDC140Q96MF4 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC4.9□□□□□ -1.62
CCDC140Q96MF4 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
CCDC140Q96MF4 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
CCDC140Q96MF4 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.9□□□□□ -1.62
CCDC140Q96MF4 AL359976.1-201ENST00000418655 3528 ntBASIC4.9□□□□□ -1.62
CCDC140Q96MF4 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
CCDC140Q96MF4 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC4.9□□□□□ -1.62
CCDC140Q96MF4 RNU4-79P-201ENST00000362764 141 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 Y_RNA.166-201ENST00000363730 102 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 RNA5SP485-201ENST00000365053 119 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 RNU6-821P-201ENST00000390995 107 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AP003170.5-201ENST00000397185 335 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 GLULP6-201ENST00000399502 913 ntBASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 150.7 ms