Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC139103.1-201ENST00000534696 1030 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
USP41Q3LFD5 OR8R1P-201ENST00000543943 764 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 MIR1254-2-201ENST00000579553 63 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.63□□□□□ -1.67
USP41Q3LFD5 AC090312.2-201ENST00000582687 378 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC4.63□□□□□ -1.67
USP41Q3LFD5 AC133552.5-201ENST00000604266 540 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 AL583856.2-201ENST00000606298 543 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
USP41Q3LFD5 AC116447.1-201ENST00000613153 453 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC4.63□□□□□ -1.67
USP41Q3LFD5 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
USP41Q3LFD5 PHKBP1-201ENST00000450951 1951 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.63□□□□□ -1.67
USP41Q3LFD5 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
USP41Q3LFD5 MTND4P26-201ENST00000415971 1359 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
USP41Q3LFD5 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
USP41Q3LFD5 POMP-202ENST00000460403 1428 ntTSL 3 BASIC4.63□□□□□ -1.67
USP41Q3LFD5 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
USP41Q3LFD5 AL672167.1-203ENST00000641299 2975 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
USP41Q3LFD5 PCF11-AS1-201ENST00000602322 1516 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 AC027290.2-201ENST00000623210 18662 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
USP41Q3LFD5 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
USP41Q3LFD5 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.62□□□□□ -1.67
USP41Q3LFD5 SPRR2C-201ENST00000290702 219 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 MTCO1P56-201ENST00000401674 224 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 AC234782.4-201ENST00000417646 1048 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 MFSD13B-201ENST00000420133 1290 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 AL157831.1-201ENST00000426134 473 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 OR5AW1P-201ENST00000426334 1006 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 RPS26P47-201ENST00000427219 348 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.62□□□□□ -1.67
USP41Q3LFD5 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
USP41Q3LFD5 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.62□□□□□ -1.67
USP41Q3LFD5 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC4.62□□□□□ -1.67
USP41Q3LFD5 CDC27P1-201ENST00000445384 715 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.62□□□□□ -1.67
USP41Q3LFD5 BX248409.1-201ENST00000455497 255 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 RPL35AP15-201ENST00000468042 339 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.62□□□□□ -1.67
USP41Q3LFD5 RPS27AP13-201ENST00000498403 237 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC4.62□□□□□ -1.67
USP41Q3LFD5 AC118282.1-201ENST00000506408 765 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 AL592156.1-201ENST00000508758 304 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 RNA5SP446-201ENST00000515955 82 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 RN7SKP265-201ENST00000516448 223 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 RN7SKP283-201ENST00000517197 270 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC4.62□□□□□ -1.67
USP41Q3LFD5 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC4.62□□□□□ -1.67
USP41Q3LFD5 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC4.62□□□□□ -1.67
USP41Q3LFD5 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC4.62□□□□□ -1.67
USP41Q3LFD5 AC106785.1-201ENST00000565935 262 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 MTND6P33-201ENST00000571794 183 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC4.62□□□□□ -1.67
USP41Q3LFD5 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
USP41Q3LFD5 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC4.62□□□□□ -1.67
USP41Q3LFD5 VN1R88P-201ENST00000596787 292 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 BNIP3P38-201ENST00000601117 544 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 NTAN1P1-201ENST00000603150 646 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 AC002487.1-201ENST00000604565 994 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 FAM27D1-201ENST00000612308 341 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.62□□□□□ -1.67
USP41Q3LFD5 VN1R7P-201ENST00000619242 903 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC4.62□□□□□ -1.67
USP41Q3LFD5 AL356863.1-201ENST00000623378 1080 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 AC112484.5-201ENST00000624189 228 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 AP001002.2-201ENST00000625137 386 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.62□□□□□ -1.67
USP41Q3LFD5 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
USP41Q3LFD5 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
USP41Q3LFD5 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
USP41Q3LFD5 AC138393.1-206ENST00000540997 1886 ntBASIC4.62□□□□□ -1.67
USP41Q3LFD5 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.62□□□□□ -1.67
USP41Q3LFD5 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
USP41Q3LFD5 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
USP41Q3LFD5 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
USP41Q3LFD5 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
USP41Q3LFD5 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
USP41Q3LFD5 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.61□□□□□ -1.67
USP41Q3LFD5 AC022893.2-201ENST00000564832 3296 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.61□□□□□ -1.67
USP41Q3LFD5 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
USP41Q3LFD5 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.61□□□□□ -1.67
USP41Q3LFD5 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.61□□□□□ -1.67
USP41Q3LFD5 RNU1-14P-201ENST00000362759 152 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.61□□□□□ -1.67
USP41Q3LFD5 AC097374.1-203ENST00000400783 485 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 RN7SKP235-201ENST00000410662 305 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 RNU6-628P-201ENST00000410675 107 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
USP41Q3LFD5 EIF1P3-201ENST00000423841 334 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 DNAJA1P1-201ENST00000425106 1187 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 NPM1P24-201ENST00000428039 894 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 RPL21P110-201ENST00000433345 446 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 ELOCP11-201ENST00000436690 332 ntBASIC4.61□□□□□ -1.67
USP41Q3LFD5 AC122718.1-201ENST00000439448 744 ntBASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 92.1 ms