Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC2.41□□□□□ -2.02
PRKDCP78527 RSL24D1P1-201ENST00000404972 493 ntBASIC2.41□□□□□ -2.02
PRKDCP78527 AC007899.1-201ENST00000412776 775 ntBASIC2.41□□□□□ -2.02
PRKDCP78527 VN1R40P-201ENST00000455196 941 ntBASIC2.41□□□□□ -2.02
PRKDCP78527 AC005008.1-201ENST00000456151 612 ntBASIC2.41□□□□□ -2.02
PRKDCP78527 AC117440.1-201ENST00000474107 571 ntBASIC2.41□□□□□ -2.02
PRKDCP78527 AC017037.2-201ENST00000513850 890 ntBASIC2.41□□□□□ -2.02
PRKDCP78527 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC2.41□□□□□ -2.02
PRKDCP78527 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.41□□□□□ -2.02
PRKDCP78527 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.41□□□□□ -2.02
PRKDCP78527 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC2.41□□□□□ -2.02
PRKDCP78527 AL139395.1-201ENST00000603662 160 ntBASIC2.41□□□□□ -2.02
PRKDCP78527 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC2.41□□□□□ -2.02
PRKDCP78527 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
PRKDCP78527 MAPK6PS3-201ENST00000403865 2162 ntBASIC2.41□□□□□ -2.02
PRKDCP78527 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.41□□□□□ -2.02
PRKDCP78527 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
PRKDCP78527 MTCO1P8-201ENST00000416914 1523 ntBASIC2.41□□□□□ -2.02
PRKDCP78527 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
PRKDCP78527 SMC4P1-201ENST00000414479 527 ntBASIC2.41□□□□□ -2.02
PRKDCP78527 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
PRKDCP78527 AHI1-217ENST00000534469 680 ntTSL 3 BASIC2.41□□□□□ -2.02
PRKDCP78527 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC2.41□□□□□ -2.02
PRKDCP78527 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC2.41□□□□□ -2.02
PRKDCP78527 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC2.41□□□□□ -2.02
PRKDCP78527 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
PRKDCP78527 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC2.41□□□□□ -2.02
PRKDCP78527 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC2.41□□□□□ -2.02
PRKDCP78527 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
PRKDCP78527 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC2.41□□□□□ -2.02
PRKDCP78527 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
PRKDCP78527 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC2.4□□□□□ -2.02
PRKDCP78527 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC2.4□□□□□ -2.02
PRKDCP78527 AL356057.1-202ENST00000402263 756 ntBASIC2.4□□□□□ -2.02
PRKDCP78527 BX119904.1-201ENST00000432026 348 ntBASIC2.4□□□□□ -2.02
PRKDCP78527 AL035458.1-201ENST00000433096 585 ntBASIC2.4□□□□□ -2.02
PRKDCP78527 KCTD9P3-201ENST00000434597 1169 ntBASIC2.4□□□□□ -2.02
PRKDCP78527 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC2.4□□□□□ -2.02
PRKDCP78527 HIGD1AP1-201ENST00000550979 275 ntBASIC2.4□□□□□ -2.02
PRKDCP78527 AC090877.1-201ENST00000561418 344 ntBASIC2.4□□□□□ -2.02
PRKDCP78527 KLKP1-201ENST00000595979 403 ntBASIC2.4□□□□□ -2.02
PRKDCP78527 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC2.4□□□□□ -2.02
PRKDCP78527 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
PRKDCP78527 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC2.4□□□□□ -2.02
PRKDCP78527 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC2.4□□□□□ -2.02
PRKDCP78527 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC2.4□□□□□ -2.02
PRKDCP78527 AC090971.4-201ENST00000560291 1800 ntBASIC2.4□□□□□ -2.02
PRKDCP78527 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC2.4□□□□□ -2.02
PRKDCP78527 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC2.4□□□□□ -2.02
PRKDCP78527 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC2.4□□□□□ -2.02
PRKDCP78527 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
PRKDCP78527 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC2.4□□□□□ -2.02
PRKDCP78527 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
PRKDCP78527 AL691447.1-201ENST00000419456 387 ntBASIC2.4□□□□□ -2.02
PRKDCP78527 AL031736.2-201ENST00000426573 787 ntBASIC2.4□□□□□ -2.02
PRKDCP78527 snoU13.23-201ENST00000458863 104 ntBASIC2.4□□□□□ -2.02
PRKDCP78527 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC2.4□□□□□ -2.02
PRKDCP78527 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC2.4□□□□□ -2.02
PRKDCP78527 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC2.4□□□□□ -2.02
PRKDCP78527 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC2.4□□□□□ -2.02
PRKDCP78527 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC2.4□□□□□ -2.03
PRKDCP78527 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC2.4□□□□□ -2.03
PRKDCP78527 RPL35AP12-201ENST00000425362 338 ntBASIC2.4□□□□□ -2.03
PRKDCP78527 AC025181.1-201ENST00000477507 416 ntBASIC2.4□□□□□ -2.03
PRKDCP78527 AC068724.1-201ENST00000487100 792 ntBASIC2.4□□□□□ -2.03
PRKDCP78527 AC124856.1-201ENST00000600819 896 ntBASIC2.4□□□□□ -2.03
PRKDCP78527 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC2.4□□□□□ -2.03
PRKDCP78527 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
PRKDCP78527 DCAF13P3-201ENST00000561147 1334 ntBASIC2.4□□□□□ -2.03
PRKDCP78527 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC2.4□□□□□ -2.03
PRKDCP78527 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC2.4□□□□□ -2.03
PRKDCP78527 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.4□□□□□ -2.03
PRKDCP78527 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC2.4□□□□□ -2.03
PRKDCP78527 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC2.4□□□□□ -2.03
PRKDCP78527 AC008549.1-201ENST00000512900 643 ntBASIC2.4□□□□□ -2.03
PRKDCP78527 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC2.4□□□□□ -2.03
PRKDCP78527 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
PRKDCP78527 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC2.39□□□□□ -2.03
PRKDCP78527 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
PRKDCP78527 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
PRKDCP78527 MIR764-201ENST00000390811 85 ntBASIC2.39□□□□□ -2.03
PRKDCP78527 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC2.39□□□□□ -2.03
PRKDCP78527 AC026801.2-201ENST00000515352 425 ntBASIC2.39□□□□□ -2.03
PRKDCP78527 AP000873.5-201ENST00000533906 236 ntBASIC2.39□□□□□ -2.03
PRKDCP78527 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC2.39□□□□□ -2.03
PRKDCP78527 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC2.39□□□□□ -2.03
PRKDCP78527 AL590808.1-201ENST00000618696 141 ntBASIC2.39□□□□□ -2.03
PRKDCP78527 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
PRKDCP78527 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
PRKDCP78527 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
PRKDCP78527 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
PRKDCP78527 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
PRKDCP78527 IL6-203ENST00000401651 539 ntTSL 2 BASIC2.39□□□□□ -2.03
PRKDCP78527 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC2.39□□□□□ -2.03
PRKDCP78527 AC022018.1-201ENST00000430685 241 ntBASIC2.39□□□□□ -2.03
PRKDCP78527 RPS20P1-201ENST00000434853 354 ntBASIC2.39□□□□□ -2.03
PRKDCP78527 AC109458.1-201ENST00000508858 316 ntBASIC2.39□□□□□ -2.03
PRKDCP78527 PPBPP1-201ENST00000510807 373 ntBASIC2.39□□□□□ -2.03
PRKDCP78527 AL139174.1-201ENST00000531489 886 ntBASIC2.39□□□□□ -2.03
PRKDCP78527 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 119.5 ms