Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC122718.1-201ENST00000439448 744 ntBASIC3.36□□□□□ -1.87
FOXA1P55317 CDC27P1-201ENST00000445384 715 ntBASIC3.36□□□□□ -1.87
FOXA1P55317 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.36□□□□□ -1.87
FOXA1P55317 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.36□□□□□ -1.87
FOXA1P55317 FAM133DP-201ENST00000464802 691 ntBASIC3.36□□□□□ -1.87
FOXA1P55317 AC021205.2-201ENST00000480069 347 ntBASIC3.36□□□□□ -1.87
FOXA1P55317 AC092045.1-201ENST00000495716 1231 ntBASIC3.36□□□□□ -1.87
FOXA1P55317 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC3.36□□□□□ -1.87
FOXA1P55317 AC020593.1-201ENST00000507399 299 ntBASIC3.36□□□□□ -1.87
FOXA1P55317 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.36□□□□□ -1.87
FOXA1P55317 CCNHP1-201ENST00000513311 678 ntBASIC3.36□□□□□ -1.87
FOXA1P55317 SNORA70.19-201ENST00000516717 90 ntBASIC3.36□□□□□ -1.87
FOXA1P55317 NPM1P52-201ENST00000518264 846 ntBASIC3.36□□□□□ -1.87
FOXA1P55317 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.36□□□□□ -1.87
FOXA1P55317 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.36□□□□□ -1.87
FOXA1P55317 VN1R85P-201ENST00000601587 426 ntBASIC3.36□□□□□ -1.87
FOXA1P55317 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.36□□□□□ -1.87
FOXA1P55317 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
FOXA1P55317 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.36□□□□□ -1.87
FOXA1P55317 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC3.36□□□□□ -1.87
FOXA1P55317 SYT14P1-202ENST00000600441 1448 ntBASIC3.36□□□□□ -1.87
FOXA1P55317 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC3.35□□□□□ -1.87
FOXA1P55317 AL592437.2-201ENST00000421655 2434 ntBASIC3.35□□□□□ -1.87
FOXA1P55317 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.35□□□□□ -1.87
FOXA1P55317 NMD3P1-201ENST00000439704 1488 ntBASIC3.35□□□□□ -1.87
FOXA1P55317 AC006042.3-201ENST00000454684 1469 ntBASIC3.35□□□□□ -1.87
FOXA1P55317 RIOK3P1-201ENST00000418778 1528 ntBASIC3.35□□□□□ -1.87
FOXA1P55317 AL049555.1-201ENST00000562834 1933 ntBASIC3.35□□□□□ -1.87
FOXA1P55317 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
FOXA1P55317 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC3.35□□□□□ -1.87
FOXA1P55317 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
FOXA1P55317 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
FOXA1P55317 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
FOXA1P55317 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
FOXA1P55317 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.35□□□□□ -1.87
FOXA1P55317 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
FOXA1P55317 RNA5SP239-201ENST00000410218 129 ntBASIC3.35□□□□□ -1.87
FOXA1P55317 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC3.35□□□□□ -1.87
FOXA1P55317 AL035423.1-201ENST00000420331 213 ntBASIC3.35□□□□□ -1.87
FOXA1P55317 UBE2V2P1-201ENST00000434717 398 ntBASIC3.35□□□□□ -1.87
FOXA1P55317 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.35□□□□□ -1.87
FOXA1P55317 AC239367.2-201ENST00000447309 705 ntBASIC3.35□□□□□ -1.87
FOXA1P55317 EIF4A1P11-201ENST00000451239 222 ntBASIC3.35□□□□□ -1.87
FOXA1P55317 AC007537.2-201ENST00000472093 511 ntBASIC3.35□□□□□ -1.87
FOXA1P55317 AC023598.1-201ENST00000472521 361 ntBASIC3.35□□□□□ -1.87
FOXA1P55317 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.35□□□□□ -1.87
FOXA1P55317 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC3.35□□□□□ -1.87
FOXA1P55317 AC025857.1-201ENST00000525252 377 ntBASIC3.35□□□□□ -1.87
FOXA1P55317 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.35□□□□□ -1.87
FOXA1P55317 GTF2IP22-201ENST00000554443 182 ntBASIC3.35□□□□□ -1.87
FOXA1P55317 MTND2P13-201ENST00000577438 1039 ntBASIC3.35□□□□□ -1.87
FOXA1P55317 AC008507.1-201ENST00000587506 734 ntBASIC3.35□□□□□ -1.87
FOXA1P55317 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.35□□□□□ -1.87
FOXA1P55317 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.35□□□□□ -1.87
FOXA1P55317 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
FOXA1P55317 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.34□□□□□ -1.87
FOXA1P55317 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.34□□□□□ -1.87
FOXA1P55317 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
FOXA1P55317 XIAPP3-201ENST00000312918 795 ntBASIC3.34□□□□□ -1.87
FOXA1P55317 RN7SKP280-201ENST00000364196 304 ntBASIC3.34□□□□□ -1.87
FOXA1P55317 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC3.34□□□□□ -1.87
FOXA1P55317 AC104297.1-201ENST00000393779 870 ntBASIC3.34□□□□□ -1.87
FOXA1P55317 CASKP1-201ENST00000412870 582 ntBASIC3.34□□□□□ -1.87
FOXA1P55317 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.34□□□□□ -1.87
FOXA1P55317 RANP4-201ENST00000413361 655 ntBASIC3.34□□□□□ -1.87
FOXA1P55317 RPS12P23-201ENST00000419579 400 ntBASIC3.34□□□□□ -1.87
FOXA1P55317 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
FOXA1P55317 GLRXP1-201ENST00000423261 334 ntBASIC3.34□□□□□ -1.87
FOXA1P55317 DPY19L1P2-201ENST00000426647 915 ntBASIC3.34□□□□□ -1.87
FOXA1P55317 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.34□□□□□ -1.87
FOXA1P55317 AC099063.2-201ENST00000446360 662 ntBASIC3.34□□□□□ -1.87
FOXA1P55317 U3.44-201ENST00000458938 192 ntBASIC3.34□□□□□ -1.87
FOXA1P55317 PLGLA-201ENST00000465668 449 ntBASIC3.34□□□□□ -1.87
FOXA1P55317 RN7SL132P-201ENST00000478131 296 ntBASIC3.34□□□□□ -1.87
FOXA1P55317 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.34□□□□□ -1.87
FOXA1P55317 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.34□□□□□ -1.87
FOXA1P55317 AP001636.2-201ENST00000525517 696 ntBASIC3.34□□□□□ -1.87
FOXA1P55317 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.34□□□□□ -1.87
FOXA1P55317 AC106785.1-201ENST00000565935 262 ntBASIC3.34□□□□□ -1.87
FOXA1P55317 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.34□□□□□ -1.87
FOXA1P55317 AC023813.4-201ENST00000607580 580 ntBASIC3.34□□□□□ -1.87
FOXA1P55317 AC245389.2-201ENST00000616023 576 ntBASIC3.34□□□□□ -1.87
FOXA1P55317 AC242843.1-201ENST00000618702 573 ntBASIC3.34□□□□□ -1.87
FOXA1P55317 AL161637.1-201ENST00000622380 412 ntBASIC3.34□□□□□ -1.87
FOXA1P55317 AP006248.2-201ENST00000623309 592 ntBASIC3.34□□□□□ -1.87
FOXA1P55317 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
FOXA1P55317 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
FOXA1P55317 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
FOXA1P55317 AC032011.1-201ENST00000611703 1549 ntBASIC3.34□□□□□ -1.88
FOXA1P55317 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC3.34□□□□□ -1.88
FOXA1P55317 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.34□□□□□ -1.88
FOXA1P55317 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
FOXA1P55317 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.33□□□□□ -1.88
FOXA1P55317 RNU6-697P-201ENST00000363348 107 ntBASIC3.33□□□□□ -1.88
FOXA1P55317 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
FOXA1P55317 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.33□□□□□ -1.88
FOXA1P55317 RNA5SP31-201ENST00000411144 127 ntBASIC3.33□□□□□ -1.88
FOXA1P55317 Z99755.1-201ENST00000414048 380 ntBASIC3.33□□□□□ -1.88
FOXA1P55317 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC3.33□□□□□ -1.88
FOXA1P55317 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 140.3 ms