Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC6□□□□□ -1.45
LIG3P49916 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC6□□□□□ -1.45
LIG3P49916 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
LIG3P49916 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC6□□□□□ -1.45
LIG3P49916 AC124945.1-201ENST00000485133 188 ntBASIC6□□□□□ -1.45
LIG3P49916 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC6□□□□□ -1.45
LIG3P49916 AC114781.3-201ENST00000512083 142 ntBASIC6□□□□□ -1.45
LIG3P49916 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC6□□□□□ -1.45
LIG3P49916 RNA5SP271-201ENST00000516700 88 ntBASIC6□□□□□ -1.45
LIG3P49916 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC6□□□□□ -1.45
LIG3P49916 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC6□□□□□ -1.45
LIG3P49916 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC6□□□□□ -1.45
LIG3P49916 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC6□□□□□ -1.45
LIG3P49916 AP003034.1-201ENST00000534621 422 ntBASIC6□□□□□ -1.45
LIG3P49916 GLYCAM1-201ENST00000546596 285 ntBASIC6□□□□□ -1.45
LIG3P49916 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC6□□□□□ -1.45
LIG3P49916 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC6□□□□□ -1.45
LIG3P49916 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC6□□□□□ -1.45
LIG3P49916 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC6□□□□□ -1.45
LIG3P49916 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC6□□□□□ -1.45
LIG3P49916 MIR4776-2-201ENST00000580204 80 ntBASIC6□□□□□ -1.45
LIG3P49916 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC6□□□□□ -1.45
LIG3P49916 AC073091.2-201ENST00000603205 907 ntBASIC6□□□□□ -1.45
LIG3P49916 AC012507.3-201ENST00000603556 477 ntBASIC6□□□□□ -1.45
LIG3P49916 AC103792.1-201ENST00000603591 919 ntBASIC6□□□□□ -1.45
LIG3P49916 ACTR3BP1-201ENST00000605584 1247 ntBASIC6□□□□□ -1.45
LIG3P49916 AL161734.1-201ENST00000609720 557 ntBASIC6□□□□□ -1.45
LIG3P49916 AL021918.2-201ENST00000613415 194 ntBASIC6□□□□□ -1.45
LIG3P49916 AC091905.1-201ENST00000624400 311 ntBASIC6□□□□□ -1.45
LIG3P49916 AC138915.3-201ENST00000562908 1389 ntBASIC6□□□□□ -1.45
LIG3P49916 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC6□□□□□ -1.45
LIG3P49916 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC6□□□□□ -1.45
LIG3P49916 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC6□□□□□ -1.45
LIG3P49916 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC6□□□□□ -1.45
LIG3P49916 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC6□□□□□ -1.45
LIG3P49916 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC5.99□□□□□ -1.45
LIG3P49916 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
LIG3P49916 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.99□□□□□ -1.45
LIG3P49916 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC5.99□□□□□ -1.45
LIG3P49916 SMG1P7-201ENST00000565246 2704 ntBASIC5.99□□□□□ -1.45
LIG3P49916 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
LIG3P49916 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
LIG3P49916 CASC19-221ENST00000641309 1382 ntBASIC5.99□□□□□ -1.45
LIG3P49916 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC5.99□□□□□ -1.45
LIG3P49916 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
LIG3P49916 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
LIG3P49916 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
LIG3P49916 RNU6-483P-201ENST00000384088 108 ntBASIC5.99□□□□□ -1.45
LIG3P49916 RNU6-441P-201ENST00000384545 106 ntBASIC5.99□□□□□ -1.45
LIG3P49916 MIR649-201ENST00000384843 97 ntBASIC5.99□□□□□ -1.45
LIG3P49916 DSTNP4-201ENST00000399472 474 ntBASIC5.99□□□□□ -1.45
LIG3P49916 EIF5P1-201ENST00000400019 1231 ntBASIC5.99□□□□□ -1.45
LIG3P49916 AL023807.1-201ENST00000407932 359 ntBASIC5.99□□□□□ -1.45
LIG3P49916 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.99□□□□□ -1.45
LIG3P49916 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
LIG3P49916 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC5.99□□□□□ -1.45
LIG3P49916 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.99□□□□□ -1.45
LIG3P49916 BX284632.2-201ENST00000421091 399 ntBASIC5.99□□□□□ -1.45
LIG3P49916 RPS3P2-201ENST00000421346 701 ntBASIC5.99□□□□□ -1.45
LIG3P49916 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC5.99□□□□□ -1.45
LIG3P49916 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC5.99□□□□□ -1.45
LIG3P49916 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.99□□□□□ -1.45
LIG3P49916 RPL31P35-201ENST00000431058 377 ntBASIC5.99□□□□□ -1.45
LIG3P49916 AL359955.2-201ENST00000445380 353 ntBASIC5.99□□□□□ -1.45
LIG3P49916 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.99□□□□□ -1.45
LIG3P49916 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
LIG3P49916 AP000542.1-201ENST00000448473 371 ntBASIC5.99□□□□□ -1.45
LIG3P49916 SBDSP1-204ENST00000453858 737 ntBASIC5.99□□□□□ -1.45
LIG3P49916 AC104563.1-201ENST00000476147 376 ntBASIC5.99□□□□□ -1.45
LIG3P49916 RPL23AP40-201ENST00000487630 390 ntBASIC5.99□□□□□ -1.45
LIG3P49916 AC023424.1-201ENST00000496058 459 ntBASIC5.99□□□□□ -1.45
LIG3P49916 RNF138P1-201ENST00000502765 546 ntBASIC5.99□□□□□ -1.45
LIG3P49916 MTND3P22-201ENST00000510932 243 ntBASIC5.99□□□□□ -1.45
LIG3P49916 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC5.99□□□□□ -1.45
LIG3P49916 RNU6-347P-201ENST00000516658 105 ntBASIC5.99□□□□□ -1.45
LIG3P49916 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC5.99□□□□□ -1.45
LIG3P49916 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC5.99□□□□□ -1.45
LIG3P49916 CYCSP28-201ENST00000534284 321 ntBASIC5.99□□□□□ -1.45
LIG3P49916 LSM6P2-201ENST00000552208 177 ntBASIC5.99□□□□□ -1.45
LIG3P49916 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC5.99□□□□□ -1.45
LIG3P49916 AL359212.1-201ENST00000556608 614 ntBASIC5.99□□□□□ -1.45
LIG3P49916 NRBF2P5-201ENST00000603087 788 ntBASIC5.99□□□□□ -1.45
LIG3P49916 AL009028.1-201ENST00000604895 802 ntBASIC5.99□□□□□ -1.45
LIG3P49916 AL136131.3-201ENST00000607600 188 ntBASIC5.99□□□□□ -1.45
LIG3P49916 AC128687.2-201ENST00000609657 566 ntBASIC5.99□□□□□ -1.45
LIG3P49916 AC009237.17-201ENST00000618111 748 ntBASIC5.99□□□□□ -1.45
LIG3P49916 AL732618.1-201ENST00000623251 301 ntBASIC5.99□□□□□ -1.45
LIG3P49916 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
LIG3P49916 SNX18P12-201ENST00000624821 759 ntBASIC5.99□□□□□ -1.45
LIG3P49916 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.99□□□□□ -1.45
LIG3P49916 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.99□□□□□ -1.45
LIG3P49916 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
LIG3P49916 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.99□□□□□ -1.45
LIG3P49916 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
LIG3P49916 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
LIG3P49916 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.99□□□□□ -1.45
LIG3P49916 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
LIG3P49916 AC144833.1-201ENST00000567953 4089 ntBASIC5.99□□□□□ -1.45
LIG3P49916 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
LIG3P49916 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms