Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.77
HOXA1P49639 AC046144.1-201ENST00000478559 1853 ntBASIC3.96□□□□□ -1.77
HOXA1P49639 MAPK10-253ENST00000641010 4072 ntBASIC3.96□□□□□ -1.77
HOXA1P49639 AC018555.1-201ENST00000567548 1980 ntBASIC3.96□□□□□ -1.77
HOXA1P49639 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
HOXA1P49639 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXA1P49639 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXA1P49639 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
HOXA1P49639 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.96□□□□□ -1.78
HOXA1P49639 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXA1P49639 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
HOXA1P49639 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
HOXA1P49639 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXA1P49639 GNAS-202ENST00000306090 477 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXA1P49639 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA1P49639 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA1P49639 RNU6-1200P-201ENST00000384162 107 ntBASIC3.96□□□□□ -1.78
HOXA1P49639 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
HOXA1P49639 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA1P49639 AC098592.1-201ENST00000419352 333 ntBASIC3.96□□□□□ -1.78
HOXA1P49639 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA1P49639 LINC00993-201ENST00000420453 540 ntBASIC3.96□□□□□ -1.78
HOXA1P49639 AL158073.1-201ENST00000426848 1104 ntBASIC3.96□□□□□ -1.78
HOXA1P49639 RPS26P47-201ENST00000427219 348 ntBASIC3.96□□□□□ -1.78
HOXA1P49639 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
HOXA1P49639 BLOC1S2P1-201ENST00000428431 301 ntBASIC3.96□□□□□ -1.78
HOXA1P49639 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXA1P49639 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXA1P49639 AL591503.2-201ENST00000442314 1005 ntBASIC3.96□□□□□ -1.78
HOXA1P49639 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA1P49639 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXA1P49639 AC023141.9-201ENST00000458734 412 ntBASIC3.96□□□□□ -1.78
HOXA1P49639 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.96□□□□□ -1.78
HOXA1P49639 RPL7P18-201ENST00000478965 734 ntBASIC3.96□□□□□ -1.78
HOXA1P49639 AC104109.1-201ENST00000498563 436 ntBASIC3.96□□□□□ -1.78
HOXA1P49639 RPF2P2-201ENST00000504693 896 ntBASIC3.96□□□□□ -1.78
HOXA1P49639 WBP1LP4-201ENST00000505043 344 ntBASIC3.96□□□□□ -1.78
HOXA1P49639 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA1P49639 MTCYBP16-201ENST00000509187 1129 ntBASIC3.96□□□□□ -1.78
HOXA1P49639 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA1P49639 AC079395.1-201ENST00000510981 262 ntBASIC3.96□□□□□ -1.78
HOXA1P49639 AC006499.6-201ENST00000511169 607 ntBASIC3.96□□□□□ -1.78
HOXA1P49639 RNU2-30P-201ENST00000516209 141 ntBASIC3.96□□□□□ -1.78
HOXA1P49639 RNU6-1225P-201ENST00000516336 65 ntBASIC3.96□□□□□ -1.78
HOXA1P49639 RN7SKP31-201ENST00000516354 278 ntBASIC3.96□□□□□ -1.78
HOXA1P49639 RNU6-232P-201ENST00000517144 64 ntBASIC3.96□□□□□ -1.78
HOXA1P49639 Y_RNA.719-201ENST00000517156 106 ntBASIC3.96□□□□□ -1.78
HOXA1P49639 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXA1P49639 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXA1P49639 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA1P49639 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
HOXA1P49639 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXA1P49639 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXA1P49639 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXA1P49639 NOP10-202ENST00000557912 436 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXA1P49639 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC3.96□□□□□ -1.78
HOXA1P49639 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA1P49639 AC079171.1-201ENST00000568788 914 ntBASIC3.96□□□□□ -1.78
HOXA1P49639 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA1P49639 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA1P49639 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA1P49639 AC008687.2-201ENST00000597865 520 ntBASIC3.96□□□□□ -1.78
HOXA1P49639 AC091488.1-201ENST00000604239 660 ntBASIC3.96□□□□□ -1.78
HOXA1P49639 AC104687.2-201ENST00000604442 342 ntBASIC3.96□□□□□ -1.78
HOXA1P49639 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXA1P49639 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXA1P49639 CDRT1-208ENST00000630868 794 ntBASIC3.96□□□□□ -1.78
HOXA1P49639 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
HOXA1P49639 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXA1P49639 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXA1P49639 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
HOXA1P49639 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXA1P49639 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HOXA1P49639 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC3.95□□□□□ -1.78
HOXA1P49639 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
HOXA1P49639 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HOXA1P49639 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HOXA1P49639 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC3.95□□□□□ -1.78
HOXA1P49639 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HOXA1P49639 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC3.95□□□□□ -1.78
HOXA1P49639 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
HOXA1P49639 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HOXA1P49639 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC3.95□□□□□ -1.78
HOXA1P49639 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HOXA1P49639 SNORA17.1-201ENST00000362945 126 ntBASIC3.95□□□□□ -1.78
HOXA1P49639 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC3.95□□□□□ -1.78
HOXA1P49639 SNORD116-23-201ENST00000384645 92 ntBASIC3.95□□□□□ -1.78
HOXA1P49639 RNU6-1300P-201ENST00000391046 108 ntBASIC3.95□□□□□ -1.78
HOXA1P49639 TAF9BP1-201ENST00000396646 746 ntBASIC3.95□□□□□ -1.78
HOXA1P49639 AL021407.1-201ENST00000404531 386 ntBASIC3.95□□□□□ -1.78
HOXA1P49639 DNAJA1P4-201ENST00000406473 1166 ntBASIC3.95□□□□□ -1.78
HOXA1P49639 RNU2-50P-201ENST00000410494 143 ntBASIC3.95□□□□□ -1.78
HOXA1P49639 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.95□□□□□ -1.78
HOXA1P49639 BOLA3P4-201ENST00000418151 400 ntBASIC3.95□□□□□ -1.78
HOXA1P49639 AC019050.1-201ENST00000418508 492 ntBASIC3.95□□□□□ -1.78
HOXA1P49639 MFSD13B-201ENST00000420133 1290 ntBASIC3.95□□□□□ -1.78
HOXA1P49639 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC3.95□□□□□ -1.78
HOXA1P49639 RGS17P1-201ENST00000423358 553 ntBASIC3.95□□□□□ -1.78
HOXA1P49639 AL365203.2-201ENST00000423444 196 ntBASIC3.95□□□□□ -1.78
HOXA1P49639 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms