Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.26□□□□□ -1.73
BRCA1P38398 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC4.26□□□□□ -1.73
BRCA1P38398 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC4.26□□□□□ -1.73
BRCA1P38398 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.26□□□□□ -1.73
BRCA1P38398 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
BRCA1P38398 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
BRCA1P38398 MTCO1P7-201ENST00000419523 1542 ntBASIC4.25□□□□□ -1.73
BRCA1P38398 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.25□□□□□ -1.73
BRCA1P38398 RNA5SP126-201ENST00000365092 109 ntBASIC4.25□□□□□ -1.73
BRCA1P38398 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
BRCA1P38398 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC4.25□□□□□ -1.73
BRCA1P38398 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC4.25□□□□□ -1.73
BRCA1P38398 RPS4XP2-201ENST00000458402 793 ntBASIC4.25□□□□□ -1.73
BRCA1P38398 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC4.25□□□□□ -1.73
BRCA1P38398 AC017037.1-201ENST00000508460 471 ntBASIC4.25□□□□□ -1.73
BRCA1P38398 AC118465.1-201ENST00000513820 1271 ntBASIC4.25□□□□□ -1.73
BRCA1P38398 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC4.25□□□□□ -1.73
BRCA1P38398 AC087276.1-201ENST00000529659 480 ntBASIC4.25□□□□□ -1.73
BRCA1P38398 AC067838.1-201ENST00000606064 577 ntBASIC4.25□□□□□ -1.73
BRCA1P38398 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.25□□□□□ -1.73
BRCA1P38398 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.25□□□□□ -1.73
BRCA1P38398 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.25□□□□□ -1.73
BRCA1P38398 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
BRCA1P38398 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
BRCA1P38398 MUC2-202ENST00000613187 4845 ntBASIC4.25□□□□□ -1.73
BRCA1P38398 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
BRCA1P38398 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
BRCA1P38398 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
BRCA1P38398 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.24□□□□□ -1.73
BRCA1P38398 AC008079.2-201ENST00000623543 20396 ntBASIC4.24□□□□□ -1.73
BRCA1P38398 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.24□□□□□ -1.73
BRCA1P38398 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
BRCA1P38398 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
BRCA1P38398 AC010469.1-201ENST00000463864 576 ntBASIC4.24□□□□□ -1.73
BRCA1P38398 AC010486.1-201ENST00000511793 424 ntBASIC4.24□□□□□ -1.73
BRCA1P38398 RNU6-579P-201ENST00000516879 102 ntBASIC4.24□□□□□ -1.73
BRCA1P38398 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC4.24□□□□□ -1.73
BRCA1P38398 MTND2P13-201ENST00000577438 1039 ntBASIC4.24□□□□□ -1.73
BRCA1P38398 AC087468.1-201ENST00000604365 630 ntBASIC4.24□□□□□ -1.73
BRCA1P38398 AL133370.2-201ENST00000619934 439 ntBASIC4.24□□□□□ -1.73
BRCA1P38398 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
BRCA1P38398 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.24□□□□□ -1.73
BRCA1P38398 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC4.24□□□□□ -1.73
BRCA1P38398 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
BRCA1P38398 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.24□□□□□ -1.73
BRCA1P38398 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
BRCA1P38398 SMG1P4-204ENST00000523028 4131 ntBASIC4.24□□□□□ -1.73
BRCA1P38398 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.24□□□□□ -1.73
BRCA1P38398 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
BRCA1P38398 HSPA8P17-201ENST00000427029 1382 ntBASIC4.24□□□□□ -1.73
BRCA1P38398 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC4.24□□□□□ -1.73
BRCA1P38398 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
BRCA1P38398 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
BRCA1P38398 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC4.24□□□□□ -1.73
BRCA1P38398 AL139132.1-201ENST00000431587 344 ntBASIC4.24□□□□□ -1.73
BRCA1P38398 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC4.24□□□□□ -1.73
BRCA1P38398 PPBPP1-201ENST00000510807 373 ntBASIC4.24□□□□□ -1.73
BRCA1P38398 MIR7106-201ENST00000612419 65 ntBASIC4.24□□□□□ -1.73
BRCA1P38398 RNVU1-4-201ENST00000612985 164 ntBASIC4.24□□□□□ -1.73
BRCA1P38398 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC4.24□□□□□ -1.73
BRCA1P38398 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
BRCA1P38398 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
BRCA1P38398 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
BRCA1P38398 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
BRCA1P38398 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
BRCA1P38398 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.23□□□□□ -1.73
BRCA1P38398 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
BRCA1P38398 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.23□□□□□ -1.73
BRCA1P38398 RNA5-8SP4-201ENST00000365096 150 ntBASIC4.23□□□□□ -1.73
BRCA1P38398 RHOT1P2-201ENST00000366423 333 ntBASIC4.23□□□□□ -1.73
BRCA1P38398 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
BRCA1P38398 HDGFP1-201ENST00000405943 252 ntBASIC4.23□□□□□ -1.73
BRCA1P38398 GSTM3P2-201ENST00000412746 530 ntBASIC4.23□□□□□ -1.73
BRCA1P38398 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC4.23□□□□□ -1.73
BRCA1P38398 VN1R31P-201ENST00000417498 730 ntBASIC4.23□□□□□ -1.73
BRCA1P38398 HIGD1AP3-201ENST00000515857 278 ntBASIC4.23□□□□□ -1.73
BRCA1P38398 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC4.23□□□□□ -1.73
BRCA1P38398 AC067852.3-201ENST00000589177 561 ntBASIC4.23□□□□□ -1.73
BRCA1P38398 AL158062.1-201ENST00000619632 745 ntBASIC4.23□□□□□ -1.73
BRCA1P38398 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.23□□□□□ -1.73
BRCA1P38398 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
BRCA1P38398 Z83843.1-201ENST00000604070 3685 ntBASIC4.23□□□□□ -1.73
BRCA1P38398 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
BRCA1P38398 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC4.23□□□□□ -1.73
BRCA1P38398 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.23□□□□□ -1.73
BRCA1P38398 SAGE2P-201ENST00000420011 2126 ntBASIC4.23□□□□□ -1.73
BRCA1P38398 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
BRCA1P38398 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.23□□□□□ -1.73
BRCA1P38398 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.23□□□□□ -1.73
BRCA1P38398 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
BRCA1P38398 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.22□□□□□ -1.73
BRCA1P38398 RSL24D1P1-201ENST00000404972 493 ntBASIC4.22□□□□□ -1.73
BRCA1P38398 Z99755.1-201ENST00000414048 380 ntBASIC4.22□□□□□ -1.73
BRCA1P38398 TRBV24OR9-2-201ENST00000416632 435 ntBASIC4.22□□□□□ -1.73
BRCA1P38398 AC069285.2-201ENST00000440210 275 ntBASIC4.22□□□□□ -1.73
BRCA1P38398 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.22□□□□□ -1.73
BRCA1P38398 AC091826.1-201ENST00000514065 313 ntBASIC4.22□□□□□ -1.73
BRCA1P38398 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.22□□□□□ -1.73
BRCA1P38398 MIR3945-201ENST00000581853 98 ntBASIC4.22□□□□□ -1.73
BRCA1P38398 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms