Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.23□□□□□ -1.73
SCN4AP35499 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SCN4AP35499 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
SCN4AP35499 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SCN4AP35499 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.22□□□□□ -1.73
SCN4AP35499 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC4.22□□□□□ -1.73
SCN4AP35499 MFSD8-233ENST00000641482 4860 ntBASIC4.22□□□□□ -1.73
SCN4AP35499 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SCN4AP35499 AC093535.2-201ENST00000624769 2326 ntBASIC4.22□□□□□ -1.73
SCN4AP35499 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SCN4AP35499 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
SCN4AP35499 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
SCN4AP35499 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.22□□□□□ -1.73
SCN4AP35499 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.22□□□□□ -1.73
SCN4AP35499 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.22□□□□□ -1.73
SCN4AP35499 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
SCN4AP35499 LIPT1P1-201ENST00000415870 1186 ntBASIC4.22□□□□□ -1.73
SCN4AP35499 AC004552.1-201ENST00000419089 348 ntBASIC4.22□□□□□ -1.73
SCN4AP35499 USP12PY-201ENST00000427677 1064 ntBASIC4.22□□□□□ -1.73
SCN4AP35499 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.22□□□□□ -1.73
SCN4AP35499 RPS26P3-201ENST00000470205 348 ntBASIC4.22□□□□□ -1.73
SCN4AP35499 AC090543.2-201ENST00000483963 348 ntBASIC4.22□□□□□ -1.73
SCN4AP35499 AC004057.1-201ENST00000485827 348 ntBASIC4.22□□□□□ -1.73
SCN4AP35499 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC4.22□□□□□ -1.73
SCN4AP35499 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC4.22□□□□□ -1.73
SCN4AP35499 RNU6-964P-201ENST00000516524 69 ntBASIC4.22□□□□□ -1.73
SCN4AP35499 IGLVIV-53-201ENST00000520107 367 ntBASIC4.22□□□□□ -1.73
SCN4AP35499 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC4.22□□□□□ -1.73
SCN4AP35499 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.22□□□□□ -1.73
SCN4AP35499 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC4.22□□□□□ -1.73
SCN4AP35499 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.22□□□□□ -1.73
SCN4AP35499 AC013412.1-201ENST00000610687 192 ntBASIC4.22□□□□□ -1.73
SCN4AP35499 BMS1P21-201ENST00000634565 365 ntBASIC4.22□□□□□ -1.73
SCN4AP35499 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.22□□□□□ -1.73
SCN4AP35499 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC4.22□□□□□ -1.73
SCN4AP35499 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
SCN4AP35499 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
SCN4AP35499 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.22□□□□□ -1.73
SCN4AP35499 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.73
SCN4AP35499 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC4.21□□□□□ -1.73
SCN4AP35499 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
SCN4AP35499 RNA5SP322-201ENST00000363617 119 ntBASIC4.21□□□□□ -1.74
SCN4AP35499 LAP3P1-201ENST00000403648 294 ntBASIC4.21□□□□□ -1.74
SCN4AP35499 JKAMPP1-201ENST00000413804 919 ntBASIC4.21□□□□□ -1.74
SCN4AP35499 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC4.21□□□□□ -1.74
SCN4AP35499 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC4.21□□□□□ -1.74
SCN4AP35499 AC233982.1-201ENST00000451247 436 ntBASIC4.21□□□□□ -1.74
SCN4AP35499 AC097262.1-201ENST00000452559 548 ntBASIC4.21□□□□□ -1.74
SCN4AP35499 FGF7P3-201ENST00000454645 303 ntBASIC4.21□□□□□ -1.74
SCN4AP35499 U3.44-201ENST00000458938 192 ntBASIC4.21□□□□□ -1.74
SCN4AP35499 FCF1P8-201ENST00000510322 597 ntBASIC4.21□□□□□ -1.74
SCN4AP35499 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4.21□□□□□ -1.74
SCN4AP35499 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC4.21□□□□□ -1.74
SCN4AP35499 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC4.21□□□□□ -1.74
SCN4AP35499 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC4.21□□□□□ -1.74
SCN4AP35499 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.21□□□□□ -1.74
SCN4AP35499 ZNF90P1-201ENST00000480493 1951 ntBASIC4.21□□□□□ -1.74
SCN4AP35499 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.21□□□□□ -1.74
SCN4AP35499 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC4.21□□□□□ -1.74
SCN4AP35499 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
SCN4AP35499 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC4.21□□□□□ -1.74
SCN4AP35499 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC4.21□□□□□ -1.74
SCN4AP35499 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
SCN4AP35499 RNU6-7-201ENST00000364784 107 ntBASIC4.21□□□□□ -1.74
SCN4AP35499 RNU6-8-201ENST00000365467 107 ntBASIC4.21□□□□□ -1.74
SCN4AP35499 AL136131.1-201ENST00000406079 803 ntBASIC4.21□□□□□ -1.74
SCN4AP35499 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.21□□□□□ -1.74
SCN4AP35499 UBE2V2P4-201ENST00000447495 259 ntBASIC4.21□□□□□ -1.74
SCN4AP35499 RN7SL585P-201ENST00000470538 280 ntBASIC4.21□□□□□ -1.74
SCN4AP35499 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.21□□□□□ -1.74
SCN4AP35499 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC4.21□□□□□ -1.74
SCN4AP35499 CR383656.14-201ENST00000551951 406 ntBASIC4.21□□□□□ -1.74
SCN4AP35499 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC4.21□□□□□ -1.74
SCN4AP35499 AC090877.1-201ENST00000561418 344 ntBASIC4.21□□□□□ -1.74
SCN4AP35499 AC025946.2-201ENST00000603398 234 ntBASIC4.21□□□□□ -1.74
SCN4AP35499 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.21□□□□□ -1.74
SCN4AP35499 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC4.21□□□□□ -1.74
SCN4AP35499 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
SCN4AP35499 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
SCN4AP35499 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.21□□□□□ -1.74
SCN4AP35499 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
SCN4AP35499 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
SCN4AP35499 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
SCN4AP35499 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
SCN4AP35499 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.2□□□□□ -1.74
SCN4AP35499 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.2□□□□□ -1.74
SCN4AP35499 ZNF603P-201ENST00000405613 487 ntBASIC4.2□□□□□ -1.74
SCN4AP35499 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC4.2□□□□□ -1.74
SCN4AP35499 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.2□□□□□ -1.74
SCN4AP35499 NPM1P39-201ENST00000449818 867 ntBASIC4.2□□□□□ -1.74
SCN4AP35499 SEPT7P3-201ENST00000455017 621 ntBASIC4.2□□□□□ -1.74
SCN4AP35499 VN1R40P-201ENST00000455196 941 ntBASIC4.2□□□□□ -1.74
SCN4AP35499 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
SCN4AP35499 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
SCN4AP35499 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC4.2□□□□□ -1.74
SCN4AP35499 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC4.2□□□□□ -1.74
SCN4AP35499 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC4.2□□□□□ -1.74
SCN4AP35499 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC4.2□□□□□ -1.74
SCN4AP35499 AL133457.1-201ENST00000564251 987 ntBASIC4.2□□□□□ -1.74
SCN4AP35499 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms