Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC5.79□□□□□ -1.48
COL8A1P27658 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
COL8A1P27658 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL8A1P27658 ZNF667-208ENST00000629654 3265 ntTSL 5 BASIC5.79□□□□□ -1.48
COL8A1P27658 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC5.79□□□□□ -1.48
COL8A1P27658 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL8A1P27658 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL8A1P27658 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL8A1P27658 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC5.79□□□□□ -1.48
COL8A1P27658 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
COL8A1P27658 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL8A1P27658 AC244502.1-201ENST00000514473 1951 ntTSL 2 BASIC5.79□□□□□ -1.48
COL8A1P27658 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL8A1P27658 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
COL8A1P27658 Y_RNA.39-201ENST00000362620 98 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 RNU6-251P-201ENST00000363235 104 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 RNA5SP514-201ENST00000363717 111 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 RNA5SP172-201ENST00000365061 118 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 U3.25-201ENST00000391209 220 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 ARF4P3-201ENST00000397387 509 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 RNU2-28P-201ENST00000410457 189 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 RN7SKP216-201ENST00000411050 312 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 Y_RNA.625-201ENST00000411256 107 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL8A1P27658 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL8A1P27658 ANAPC1P1-201ENST00000426186 2145 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 SNAP23P1-201ENST00000433229 246 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 AL138787.1-202ENST00000437804 898 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 RPL36AP39-201ENST00000445859 318 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 PRDX1P1-201ENST00000449329 596 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 PPIAP27-201ENST00000453800 265 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 RPS20P32-201ENST00000456044 356 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 OR2A1-AS1-202ENST00000467944 422 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 AC098847.1-201ENST00000473094 348 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC5.79□□□□□ -1.48
COL8A1P27658 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.79□□□□□ -1.48
COL8A1P27658 CEACAMP10-202ENST00000495431 496 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.79□□□□□ -1.48
COL8A1P27658 HMGN1P9-201ENST00000515212 298 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 Y_RNA.715-201ENST00000517082 110 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC5.79□□□□□ -1.48
COL8A1P27658 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC5.79□□□□□ -1.48
COL8A1P27658 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.79□□□□□ -1.48
COL8A1P27658 HAUS8P1-201ENST00000549005 542 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 AC079600.1-201ENST00000550326 297 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC5.79□□□□□ -1.48
COL8A1P27658 AL356432.3-201ENST00000568952 465 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC5.79□□□□□ -1.48
COL8A1P27658 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC5.79□□□□□ -1.48
COL8A1P27658 OR7E18P-201ENST00000592589 702 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 AC006254.3-201ENST00000603353 884 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 AC009229.3-201ENST00000608056 282 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 AC211433.2-201ENST00000608433 387 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC5.79□□□□□ -1.48
COL8A1P27658 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC5.79□□□□□ -1.48
COL8A1P27658 uc_338.34-201ENST00000617467 174 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
COL8A1P27658 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL8A1P27658 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL8A1P27658 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC5.79□□□□□ -1.48
COL8A1P27658 NCOA4P3-201ENST00000513203 1877 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC5.79□□□□□ -1.48
COL8A1P27658 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC5.79□□□□□ -1.48
COL8A1P27658 DTHD1-206ENST00000639862 3819 ntTSL 5 BASIC5.79□□□□□ -1.48
COL8A1P27658 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC5.79□□□□□ -1.48
COL8A1P27658 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC5.79□□□□□ -1.48
COL8A1P27658 ECT2-201ENST00000232458 4087 ntAPPRIS P2 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL8A1P27658 AL161912.4-201ENST00000623889 2468 ntBASIC5.79□□□□□ -1.48
COL8A1P27658 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
COL8A1P27658 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
COL8A1P27658 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC5.79□□□□□ -1.48
COL8A1P27658 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL8A1P27658 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL8A1P27658 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL8A1P27658 LINC02466-201ENST00000500092 1963 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL8A1P27658 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.78□□□□□ -1.48
COL8A1P27658 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL8A1P27658 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL8A1P27658 KARSP2-201ENST00000415696 1639 ntBASIC5.78□□□□□ -1.48
COL8A1P27658 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL8A1P27658 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC5.78□□□□□ -1.48
COL8A1P27658 KDELC2-202ENST00000434945 4374 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL8A1P27658 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL8A1P27658 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL8A1P27658 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL8A1P27658 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL8A1P27658 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL8A1P27658 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
COL8A1P27658 RNY4P16-201ENST00000364768 94 ntBASIC5.78□□□□□ -1.48
COL8A1P27658 Y_RNA.297-201ENST00000364950 91 ntBASIC5.78□□□□□ -1.48
COL8A1P27658 Y_RNA.404-201ENST00000383978 102 ntBASIC5.78□□□□□ -1.48
COL8A1P27658 RNU6-48P-201ENST00000384161 107 ntBASIC5.78□□□□□ -1.48
COL8A1P27658 SNORA51.9-201ENST00000384295 124 ntBASIC5.78□□□□□ -1.48
COL8A1P27658 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL8A1P27658 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
COL8A1P27658 RN7SKP108-201ENST00000411367 328 ntBASIC5.78□□□□□ -1.48
COL8A1P27658 AL133268.2-201ENST00000416595 430 ntTSL 3 BASIC5.78□□□□□ -1.48
COL8A1P27658 SOCS5P3-201ENST00000425115 1576 ntBASIC5.78□□□□□ -1.48
COL8A1P27658 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms