Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
BDNFP23560 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC4.79□□□□□ -1.64
BDNFP23560 GAS5-AS1-201ENST00000602767 694 ntBASIC4.79□□□□□ -1.64
BDNFP23560 AC023043.4-201ENST00000612081 449 ntBASIC4.79□□□□□ -1.64
BDNFP23560 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC4.79□□□□□ -1.64
BDNFP23560 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.79□□□□□ -1.64
BDNFP23560 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
BDNFP23560 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.79□□□□□ -1.64
BDNFP23560 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
BDNFP23560 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
BDNFP23560 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
BDNFP23560 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
BDNFP23560 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
BDNFP23560 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.78□□□□□ -1.64
BDNFP23560 MAPK10-303ENST00000641324 3959 ntBASIC4.78□□□□□ -1.64
BDNFP23560 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
BDNFP23560 AC125257.1-201ENST00000560400 2930 ntBASIC4.78□□□□□ -1.64
BDNFP23560 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.78□□□□□ -1.64
BDNFP23560 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
BDNFP23560 HMGB1P5-201ENST00000255320 642 ntBASIC4.78□□□□□ -1.64
BDNFP23560 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
BDNFP23560 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
BDNFP23560 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.78□□□□□ -1.64
BDNFP23560 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
BDNFP23560 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
BDNFP23560 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC4.78□□□□□ -1.64
BDNFP23560 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.78□□□□□ -1.64
BDNFP23560 P2RY10P2-201ENST00000416730 913 ntBASIC4.78□□□□□ -1.64
BDNFP23560 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.78□□□□□ -1.64
BDNFP23560 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC4.78□□□□□ -1.64
BDNFP23560 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.78□□□□□ -1.64
BDNFP23560 AP000949.1-201ENST00000438328 629 ntBASIC4.78□□□□□ -1.64
BDNFP23560 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC4.78□□□□□ -1.64
BDNFP23560 MTCO3P2-201ENST00000457365 171 ntBASIC4.78□□□□□ -1.64
BDNFP23560 RPL9P32-201ENST00000464118 620 ntBASIC4.78□□□□□ -1.64
BDNFP23560 AL591473.1-201ENST00000464297 313 ntBASIC4.78□□□□□ -1.64
BDNFP23560 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC4.78□□□□□ -1.64
BDNFP23560 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
BDNFP23560 AC011352.3-201ENST00000505162 593 ntBASIC4.78□□□□□ -1.64
BDNFP23560 NDUFB4P9-201ENST00000511646 388 ntBASIC4.78□□□□□ -1.64
BDNFP23560 AC008694.2-201ENST00000517591 306 ntBASIC4.78□□□□□ -1.64
BDNFP23560 AP000827.1-201ENST00000527814 258 ntBASIC4.78□□□□□ -1.64
BDNFP23560 MTCYBP41-201ENST00000528913 1123 ntBASIC4.78□□□□□ -1.64
BDNFP23560 AC068339.2-201ENST00000534395 618 ntBASIC4.78□□□□□ -1.64
BDNFP23560 MIR4666A-201ENST00000580160 79 ntBASIC4.78□□□□□ -1.64
BDNFP23560 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC4.78□□□□□ -1.64
BDNFP23560 AC020634.1-201ENST00000608701 549 ntBASIC4.78□□□□□ -1.64
BDNFP23560 AC012531.5-201ENST00000611375 151 ntBASIC4.78□□□□□ -1.64
BDNFP23560 AC080188.3-201ENST00000624842 748 ntBASIC4.78□□□□□ -1.64
BDNFP23560 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
BDNFP23560 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
BDNFP23560 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.78□□□□□ -1.64
BDNFP23560 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.78□□□□□ -1.64
BDNFP23560 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.78□□□□□ -1.64
BDNFP23560 USP8P1-201ENST00000494673 3183 ntBASIC4.77□□□□□ -1.65
BDNFP23560 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
BDNFP23560 AL672167.1-203ENST00000641299 2975 ntBASIC4.77□□□□□ -1.65
BDNFP23560 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.77□□□□□ -1.65
BDNFP23560 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.77□□□□□ -1.65
BDNFP23560 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.77□□□□□ -1.65
BDNFP23560 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
BDNFP23560 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
BDNFP23560 RPL32P3-201ENST00000359025 275 ntBASIC4.77□□□□□ -1.65
BDNFP23560 RNU1-94P-201ENST00000362627 173 ntBASIC4.77□□□□□ -1.65
BDNFP23560 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.65
BDNFP23560 RN7SKP199-201ENST00000410325 305 ntBASIC4.77□□□□□ -1.65
BDNFP23560 TMSB10P2-201ENST00000416049 131 ntBASIC4.77□□□□□ -1.65
BDNFP23560 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.77□□□□□ -1.65
BDNFP23560 MTND2P16-201ENST00000419987 799 ntBASIC4.77□□□□□ -1.65
BDNFP23560 AC009237.2-201ENST00000421358 284 ntBASIC4.77□□□□□ -1.65
BDNFP23560 AL356387.2-201ENST00000422272 243 ntBASIC4.77□□□□□ -1.65
BDNFP23560 AL592293.2-201ENST00000422292 996 ntBASIC4.77□□□□□ -1.65
BDNFP23560 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC4.77□□□□□ -1.65
BDNFP23560 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.77□□□□□ -1.65
BDNFP23560 AC073143.1-201ENST00000436316 395 ntBASIC4.77□□□□□ -1.65
BDNFP23560 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
BDNFP23560 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC4.77□□□□□ -1.65
BDNFP23560 RPL23AP43-201ENST00000446445 471 ntBASIC4.77□□□□□ -1.65
BDNFP23560 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC4.77□□□□□ -1.65
BDNFP23560 AC104306.1-201ENST00000449702 371 ntBASIC4.77□□□□□ -1.65
BDNFP23560 snoU13.3-201ENST00000459441 104 ntBASIC4.77□□□□□ -1.65
BDNFP23560 RPL7AP28-201ENST00000464513 571 ntBASIC4.77□□□□□ -1.65
BDNFP23560 AC104629.1-201ENST00000494226 508 ntBASIC4.77□□□□□ -1.65
BDNFP23560 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.77□□□□□ -1.65
BDNFP23560 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.77□□□□□ -1.65
BDNFP23560 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.77□□□□□ -1.65
BDNFP23560 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
BDNFP23560 AC109471.1-201ENST00000511631 612 ntBASIC4.77□□□□□ -1.65
BDNFP23560 AC138938.1-201ENST00000515431 782 ntBASIC4.77□□□□□ -1.65
BDNFP23560 RNU4ATAC10P-201ENST00000516967 122 ntBASIC4.77□□□□□ -1.65
BDNFP23560 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.77□□□□□ -1.65
BDNFP23560 AP004371.1-201ENST00000525240 214 ntBASIC4.77□□□□□ -1.65
BDNFP23560 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
BDNFP23560 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.77□□□□□ -1.65
BDNFP23560 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.77□□□□□ -1.65
BDNFP23560 MTCYBP27-201ENST00000555160 670 ntBASIC4.77□□□□□ -1.65
BDNFP23560 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC4.77□□□□□ -1.65
BDNFP23560 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
BDNFP23560 RN7SL176P-201ENST00000580352 264 ntBASIC4.77□□□□□ -1.65
BDNFP23560 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms