Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 U6.107-201ENST00000637108 79 ntBASIC4.04□□□□□ -1.76
VPS35Q96QK1 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
VPS35Q96QK1 AC026951.1-201ENST00000559530 2459 ntBASIC4.04□□□□□ -1.76
VPS35Q96QK1 HSPA8P1-201ENST00000425843 1833 ntBASIC4.04□□□□□ -1.76
VPS35Q96QK1 SAGE2P-201ENST00000420011 2126 ntBASIC4.04□□□□□ -1.76
VPS35Q96QK1 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
VPS35Q96QK1 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 AL049737.1-201ENST00000413920 1403 ntBASIC4.04□□□□□ -1.76
VPS35Q96QK1 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS35Q96QK1 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VPS35Q96QK1 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.03□□□□□ -1.76
VPS35Q96QK1 CASC19-261ENST00000641853 1638 ntBASIC4.03□□□□□ -1.76
VPS35Q96QK1 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
VPS35Q96QK1 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS35Q96QK1 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS35Q96QK1 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS35Q96QK1 SNORA37-201ENST00000384504 129 ntBASIC4.03□□□□□ -1.76
VPS35Q96QK1 HMGB3P18-201ENST00000406327 590 ntBASIC4.03□□□□□ -1.76
VPS35Q96QK1 UBE2V1P11-201ENST00000411559 285 ntBASIC4.03□□□□□ -1.76
VPS35Q96QK1 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS35Q96QK1 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS35Q96QK1 AC005189.1-201ENST00000431286 310 ntBASIC4.03□□□□□ -1.76
VPS35Q96QK1 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS35Q96QK1 MTND4P15-201ENST00000437913 1033 ntBASIC4.03□□□□□ -1.76
VPS35Q96QK1 HSFY6P-201ENST00000445573 403 ntBASIC4.03□□□□□ -1.76
VPS35Q96QK1 AL353718.1-201ENST00000451028 517 ntBASIC4.03□□□□□ -1.76
VPS35Q96QK1 AC068305.1-201ENST00000497406 726 ntBASIC4.03□□□□□ -1.76
VPS35Q96QK1 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS35Q96QK1 MTATP6P22-201ENST00000507369 598 ntBASIC4.03□□□□□ -1.76
VPS35Q96QK1 AC010468.3-201ENST00000508225 458 ntBASIC4.03□□□□□ -1.76
VPS35Q96QK1 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS35Q96QK1 COX6B1P6-201ENST00000522347 255 ntBASIC4.03□□□□□ -1.76
VPS35Q96QK1 AC087272.1-201ENST00000523624 533 ntBASIC4.03□□□□□ -1.76
VPS35Q96QK1 UBTFL9-201ENST00000534504 1148 ntBASIC4.03□□□□□ -1.76
VPS35Q96QK1 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS35Q96QK1 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS35Q96QK1 AGGF1P8-201ENST00000562979 1000 ntBASIC4.03□□□□□ -1.76
VPS35Q96QK1 AL360157.1-201ENST00000565962 87 ntBASIC4.03□□□□□ -1.76
VPS35Q96QK1 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS35Q96QK1 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS35Q96QK1 AC025627.2-201ENST00000576220 160 ntBASIC4.03□□□□□ -1.76
VPS35Q96QK1 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS35Q96QK1 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS35Q96QK1 AC079880.2-201ENST00000603790 1213 ntBASIC4.03□□□□□ -1.76
VPS35Q96QK1 AC104662.1-201ENST00000604448 511 ntBASIC4.03□□□□□ -1.76
VPS35Q96QK1 AC090246.1-201ENST00000616499 426 ntBASIC4.03□□□□□ -1.76
VPS35Q96QK1 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS35Q96QK1 AL139811.1-201ENST00000424779 2299 ntBASIC4.03□□□□□ -1.76
VPS35Q96QK1 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
VPS35Q96QK1 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VPS35Q96QK1 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS35Q96QK1 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VPS35Q96QK1 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VPS35Q96QK1 Z82217.1-201ENST00000625157 8149 ntBASIC4.02□□□□□ -1.77
VPS35Q96QK1 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.02□□□□□ -1.77
VPS35Q96QK1 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
VPS35Q96QK1 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC4.02□□□□□ -1.77
VPS35Q96QK1 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.02□□□□□ -1.77
VPS35Q96QK1 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS35Q96QK1 RNU6-1005P-201ENST00000384519 107 ntBASIC4.02□□□□□ -1.77
VPS35Q96QK1 RNU6-796P-201ENST00000391086 107 ntBASIC4.02□□□□□ -1.77
VPS35Q96QK1 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
VPS35Q96QK1 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC4.02□□□□□ -1.77
VPS35Q96QK1 OR4C10P-201ENST00000434991 931 ntBASIC4.02□□□□□ -1.77
VPS35Q96QK1 ELOCP3-201ENST00000439303 348 ntBASIC4.02□□□□□ -1.77
VPS35Q96QK1 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS35Q96QK1 AC103987.1-201ENST00000473394 348 ntBASIC4.02□□□□□ -1.77
VPS35Q96QK1 AL035404.1-201ENST00000497982 568 ntBASIC4.02□□□□□ -1.77
VPS35Q96QK1 COL6A4P2-205ENST00000509855 506 ntBASIC4.02□□□□□ -1.77
VPS35Q96QK1 OR5H4P-201ENST00000510851 923 ntBASIC4.02□□□□□ -1.77
VPS35Q96QK1 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS35Q96QK1 AC008562.1-201ENST00000521763 330 ntBASIC4.02□□□□□ -1.77
VPS35Q96QK1 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS35Q96QK1 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS35Q96QK1 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS35Q96QK1 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.02□□□□□ -1.77
VPS35Q96QK1 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC4.02□□□□□ -1.77
VPS35Q96QK1 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS35Q96QK1 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS35Q96QK1 AC007224.1-201ENST00000564410 144 ntBASIC4.02□□□□□ -1.77
VPS35Q96QK1 AC079171.1-201ENST00000568788 914 ntBASIC4.02□□□□□ -1.77
VPS35Q96QK1 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.02□□□□□ -1.77
VPS35Q96QK1 AC067852.4-201ENST00000590314 478 ntBASIC4.02□□□□□ -1.77
VPS35Q96QK1 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.02□□□□□ -1.77
VPS35Q96QK1 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS35Q96QK1 ZNF92P2-201ENST00000600543 1059 ntBASIC4.02□□□□□ -1.77
VPS35Q96QK1 AL671309.1-201ENST00000603750 544 ntBASIC4.02□□□□□ -1.77
VPS35Q96QK1 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS35Q96QK1 AC245389.2-201ENST00000616023 576 ntBASIC4.02□□□□□ -1.77
VPS35Q96QK1 AC243756.2-201ENST00000618406 463 ntBASIC4.02□□□□□ -1.77
VPS35Q96QK1 AC242843.1-201ENST00000618702 573 ntBASIC4.02□□□□□ -1.77
VPS35Q96QK1 AP006248.3-201ENST00000623580 594 ntBASIC4.02□□□□□ -1.77
VPS35Q96QK1 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS35Q96QK1 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS35Q96QK1 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS35Q96QK1 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms