Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
FOXF1Q12946 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
FOXF1Q12946 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
FOXF1Q12946 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.23□□□□□ -1.89
FOXF1Q12946 AL391417.1-201ENST00000404100 426 ntBASIC3.23□□□□□ -1.89
FOXF1Q12946 SYF2P2-201ENST00000417620 583 ntBASIC3.23□□□□□ -1.89
FOXF1Q12946 SDCBPP2-201ENST00000424643 885 ntBASIC3.23□□□□□ -1.89
FOXF1Q12946 AC006989.1-201ENST00000427212 131 ntBASIC3.23□□□□□ -1.89
FOXF1Q12946 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.23□□□□□ -1.89
FOXF1Q12946 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXF1Q12946 MTCO3P16-201ENST00000454456 754 ntBASIC3.23□□□□□ -1.89
FOXF1Q12946 SNORD105B-201ENST00000458770 79 ntBASIC3.23□□□□□ -1.89
FOXF1Q12946 AC005726.1-201ENST00000494679 427 ntBASIC3.23□□□□□ -1.89
FOXF1Q12946 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXF1Q12946 RNU6-579P-201ENST00000516879 102 ntBASIC3.23□□□□□ -1.89
FOXF1Q12946 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.23□□□□□ -1.89
FOXF1Q12946 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.23□□□□□ -1.89
FOXF1Q12946 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXF1Q12946 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.23□□□□□ -1.89
FOXF1Q12946 AC007424.1-203ENST00000554613 687 ntBASIC3.23□□□□□ -1.89
FOXF1Q12946 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC3.23□□□□□ -1.89
FOXF1Q12946 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXF1Q12946 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.23□□□□□ -1.89
FOXF1Q12946 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXF1Q12946 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.23□□□□□ -1.89
FOXF1Q12946 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
FOXF1Q12946 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.23□□□□□ -1.89
FOXF1Q12946 AC008121.2-201ENST00000614647 523 ntBASIC3.23□□□□□ -1.89
FOXF1Q12946 U4.6-201ENST00000621618 127 ntBASIC3.23□□□□□ -1.89
FOXF1Q12946 AP003355.3-201ENST00000623465 114 ntBASIC3.23□□□□□ -1.89
FOXF1Q12946 AL161912.2-201ENST00000565707 3007 ntBASIC3.23□□□□□ -1.89
FOXF1Q12946 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.23□□□□□ -1.89
FOXF1Q12946 AC022893.2-201ENST00000564832 3296 ntBASIC3.23□□□□□ -1.89
FOXF1Q12946 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
FOXF1Q12946 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
FOXF1Q12946 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
FOXF1Q12946 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
FOXF1Q12946 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
FOXF1Q12946 SNORA73.2-201ENST00000364946 201 ntBASIC3.22□□□□□ -1.89
FOXF1Q12946 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
FOXF1Q12946 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.22□□□□□ -1.89
FOXF1Q12946 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
FOXF1Q12946 RNU6-167P-201ENST00000384292 106 ntBASIC3.22□□□□□ -1.89
FOXF1Q12946 U3.39-201ENST00000408569 239 ntBASIC3.22□□□□□ -1.89
FOXF1Q12946 MTND4P22-201ENST00000413116 1169 ntBASIC3.22□□□□□ -1.89
FOXF1Q12946 TRGV7-201ENST00000427089 353 ntBASIC3.22□□□□□ -1.89
FOXF1Q12946 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC3.22□□□□□ -1.89
FOXF1Q12946 GOT2P5-201ENST00000433995 546 ntBASIC3.22□□□□□ -1.89
FOXF1Q12946 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.22□□□□□ -1.89
FOXF1Q12946 MTCYBP21-201ENST00000443300 1113 ntBASIC3.22□□□□□ -1.89
FOXF1Q12946 Z95327.1-201ENST00000446082 482 ntBASIC3.22□□□□□ -1.89
FOXF1Q12946 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC3.22□□□□□ -1.89
FOXF1Q12946 SNORA84-201ENST00000459229 133 ntBASIC3.22□□□□□ -1.89
FOXF1Q12946 RNU7-170P-201ENST00000459303 61 ntBASIC3.22□□□□□ -1.89
FOXF1Q12946 RPL21P71-201ENST00000465598 459 ntBASIC3.22□□□□□ -1.89
FOXF1Q12946 AC084357.1-201ENST00000473404 255 ntBASIC3.22□□□□□ -1.89
FOXF1Q12946 HMGB3P14-201ENST00000494195 599 ntBASIC3.22□□□□□ -1.89
FOXF1Q12946 NIPA2P2-201ENST00000496376 1083 ntBASIC3.22□□□□□ -1.89
FOXF1Q12946 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.22□□□□□ -1.89
FOXF1Q12946 NPM1P52-201ENST00000518264 846 ntBASIC3.22□□□□□ -1.89
FOXF1Q12946 AC026403.1-201ENST00000518938 295 ntBASIC3.22□□□□□ -1.89
FOXF1Q12946 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.22□□□□□ -1.89
FOXF1Q12946 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC3.22□□□□□ -1.89
FOXF1Q12946 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.22□□□□□ -1.89
FOXF1Q12946 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC3.22□□□□□ -1.89
FOXF1Q12946 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.22□□□□□ -1.89
FOXF1Q12946 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.22□□□□□ -1.89
FOXF1Q12946 AC006116.10-201ENST00000591836 581 ntBASIC3.22□□□□□ -1.89
FOXF1Q12946 AC020914.6-201ENST00000594327 272 ntBASIC3.22□□□□□ -1.89
FOXF1Q12946 AC016957.2-201ENST00000616998 848 ntBASIC3.22□□□□□ -1.89
FOXF1Q12946 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC3.22□□□□□ -1.89
FOXF1Q12946 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.22□□□□□ -1.89
FOXF1Q12946 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
FOXF1Q12946 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
FOXF1Q12946 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
FOXF1Q12946 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
FOXF1Q12946 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
FOXF1Q12946 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
FOXF1Q12946 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
FOXF1Q12946 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
FOXF1Q12946 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.21□□□□□ -1.89
FOXF1Q12946 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
FOXF1Q12946 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.21□□□□□ -1.89
FOXF1Q12946 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
FOXF1Q12946 RNA5SP235-201ENST00000365411 114 ntBASIC3.21□□□□□ -1.9
FOXF1Q12946 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXF1Q12946 RNU6-1279P-201ENST00000383917 103 ntBASIC3.21□□□□□ -1.9
FOXF1Q12946 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
FOXF1Q12946 PTMAP2-201ENST00000397627 327 ntBASIC3.21□□□□□ -1.9
FOXF1Q12946 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.21□□□□□ -1.9
FOXF1Q12946 RN7SKP53-201ENST00000411337 315 ntBASIC3.21□□□□□ -1.9
FOXF1Q12946 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC3.21□□□□□ -1.9
FOXF1Q12946 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXF1Q12946 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC3.21□□□□□ -1.9
FOXF1Q12946 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
FOXF1Q12946 AC074367.1-201ENST00000438685 1125 ntBASIC3.21□□□□□ -1.9
FOXF1Q12946 HMGB3P8-201ENST00000449709 577 ntBASIC3.21□□□□□ -1.9
FOXF1Q12946 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXF1Q12946 RPL7L1P8-201ENST00000469911 741 ntBASIC3.21□□□□□ -1.9
FOXF1Q12946 AC022336.1-201ENST00000475510 337 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms