Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD3P31249 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD3P31249 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
HOXD3P31249 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD3P31249 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD3P31249 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
HOXD3P31249 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC4.05□□□□□ -1.76
HOXD3P31249 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXD3P31249 AC135352.1-201ENST00000506173 1418 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXD3P31249 AC093536.2-201ENST00000565257 1406 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 AC092747.4-201ENST00000620519 1861 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC4.05□□□□□ -1.76
HOXD3P31249 MTND4P16-201ENST00000466108 1367 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.05□□□□□ -1.76
HOXD3P31249 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC4.05□□□□□ -1.76
HOXD3P31249 AC090017.1-201ENST00000548612 1779 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXD3P31249 RNU6-251P-201ENST00000363235 104 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 RN7SKP145-201ENST00000363291 303 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 CUBN-201ENST00000377823 705 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXD3P31249 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXD3P31249 Y_RNA.516-201ENST00000384541 124 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 ADAM24P-201ENST00000398655 2101 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 MTCYBP36-201ENST00000404146 440 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
HOXD3P31249 PRELID3BP11-201ENST00000414230 479 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 ELOCP17-201ENST00000414751 326 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 MTCYBP38-201ENST00000417160 1123 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC4.05□□□□□ -1.76
HOXD3P31249 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC4.05□□□□□ -1.76
HOXD3P31249 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXD3P31249 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC4.05□□□□□ -1.76
HOXD3P31249 AC104837.2-201ENST00000427236 424 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 BX276092.6-201ENST00000430476 250 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXD3P31249 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXD3P31249 AL353597.2-202ENST00000434901 373 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 NMNAT1P2-201ENST00000435192 860 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXD3P31249 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.05□□□□□ -1.76
HOXD3P31249 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC4.05□□□□□ -1.76
HOXD3P31249 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXD3P31249 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXD3P31249 EIF4A1P11-201ENST00000451239 222 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 CBX1P2-201ENST00000453841 458 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 MTCYBP1-201ENST00000454315 1119 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 BX276092.8-201ENST00000455722 250 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 RNU6-1218P-201ENST00000458990 108 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 AC013828.1-201ENST00000481845 158 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 AC090013.1-201ENST00000485147 480 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 RPS24P16-201ENST00000497294 392 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC4.05□□□□□ -1.76
HOXD3P31249 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC4.05□□□□□ -1.76
HOXD3P31249 KRT19P6-201ENST00000510983 209 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 AC012400.1-201ENST00000518452 381 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXD3P31249 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXD3P31249 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXD3P31249 AC024940.3-201ENST00000538551 316 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXD3P31249 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXD3P31249 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC4.05□□□□□ -1.76
HOXD3P31249 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXD3P31249 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXD3P31249 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXD3P31249 ELOCP28-201ENST00000590044 317 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 AC012065.4-201ENST00000602445 679 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 AL136363.2-201ENST00000604173 851 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 AC009597.2-201ENST00000604659 592 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 AC012360.2-201ENST00000609349 391 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 AC010632.3-201ENST00000611377 369 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 AC090527.3-201ENST00000619041 548 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 AL359740.1-201ENST00000624340 592 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 CR392039.4-201ENST00000624968 501 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXD3P31249 AL451142.2-201ENST00000429076 2090 ntBASIC4.05□□□□□ -1.76
HOXD3P31249 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXD3P31249 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.05□□□□□ -1.76
HOXD3P31249 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXD3P31249 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXD3P31249 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXD3P31249 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXD3P31249 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.05□□□□□ -1.76
HOXD3P31249 LARS-201ENST00000274562 2213 ntTSL 2 BASIC4.05□□□□□ -1.76
HOXD3P31249 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
HOXD3P31249 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HOXD3P31249 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXD3P31249 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC4.04□□□□□ -1.76
HOXD3P31249 ZNF37BP-203ENST00000452306 1352 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 CASC19-221ENST00000641309 1382 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 ALB-202ENST00000401494 1659 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXD3P31249 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.04□□□□□ -1.76
HOXD3P31249 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC4.04□□□□□ -1.76
HOXD3P31249 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXD3P31249 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXD3P31249 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXD3P31249 MIR133A2-201ENST00000347538 102 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 RNA5SP123-201ENST00000363244 119 ntBASIC4.04□□□□□ -1.76
HOXD3P31249 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms