Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 CDR1-202ENST00000625883 1485 ntBASIC5.8□□□□□ -1.48
HMGB1P09429 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC5.8□□□□□ -1.48
HMGB1P09429 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC5.8□□□□□ -1.48
HMGB1P09429 MIR506-201ENST00000384998 124 ntBASIC5.8□□□□□ -1.48
HMGB1P09429 U3.29-201ENST00000391296 212 ntBASIC5.8□□□□□ -1.48
HMGB1P09429 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
HMGB1P09429 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC5.8□□□□□ -1.48
HMGB1P09429 AL589647.1-201ENST00000402485 466 ntBASIC5.8□□□□□ -1.48
HMGB1P09429 RNA5SP345-201ENST00000410646 108 ntBASIC5.8□□□□□ -1.48
HMGB1P09429 RNU2-15P-201ENST00000410692 191 ntBASIC5.8□□□□□ -1.48
HMGB1P09429 AC012065.2-201ENST00000421295 375 ntBASIC5.8□□□□□ -1.48
HMGB1P09429 GLRXP1-201ENST00000423261 334 ntBASIC5.8□□□□□ -1.48
HMGB1P09429 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HMGB1P09429 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC5.8□□□□□ -1.48
HMGB1P09429 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC5.8□□□□□ -1.48
HMGB1P09429 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC5.8□□□□□ -1.48
HMGB1P09429 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC5.8□□□□□ -1.48
HMGB1P09429 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC5.8□□□□□ -1.48
HMGB1P09429 AC000111.2-201ENST00000448200 210 ntBASIC5.8□□□□□ -1.48
HMGB1P09429 snoU13.24-201ENST00000458998 104 ntBASIC5.8□□□□□ -1.48
HMGB1P09429 AC007686.1-201ENST00000488511 463 ntBASIC5.8□□□□□ -1.48
HMGB1P09429 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC5.8□□□□□ -1.48
HMGB1P09429 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HMGB1P09429 AC140172.1-201ENST00000502928 141 ntBASIC5.8□□□□□ -1.48
HMGB1P09429 HMGB1P22-201ENST00000505315 124 ntBASIC5.8□□□□□ -1.48
HMGB1P09429 AC006390.1-201ENST00000508068 283 ntBASIC5.8□□□□□ -1.48
HMGB1P09429 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC5.8□□□□□ -1.48
HMGB1P09429 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC5.8□□□□□ -1.48
HMGB1P09429 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC5.8□□□□□ -1.48
HMGB1P09429 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC5.8□□□□□ -1.48
HMGB1P09429 AC138701.1-201ENST00000524329 714 ntBASIC5.8□□□□□ -1.48
HMGB1P09429 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC5.8□□□□□ -1.48
HMGB1P09429 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.8□□□□□ -1.48
HMGB1P09429 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC5.8□□□□□ -1.48
HMGB1P09429 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC5.8□□□□□ -1.48
HMGB1P09429 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC5.8□□□□□ -1.48
HMGB1P09429 MIR3690-201ENST00000580266 75 ntBASIC5.8□□□□□ -1.48
HMGB1P09429 SNORA74C-1-201ENST00000580726 201 ntBASIC5.8□□□□□ -1.48
HMGB1P09429 RN7SL753P-201ENST00000581238 290 ntBASIC5.8□□□□□ -1.48
HMGB1P09429 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC5.8□□□□□ -1.48
HMGB1P09429 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC5.8□□□□□ -1.48
HMGB1P09429 AC011816.2-201ENST00000607089 556 ntBASIC5.8□□□□□ -1.48
HMGB1P09429 AC010424.2-201ENST00000607594 443 ntBASIC5.8□□□□□ -1.48
HMGB1P09429 AC022509.4-201ENST00000621404 572 ntBASIC5.8□□□□□ -1.48
HMGB1P09429 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
HMGB1P09429 DHX9P1-201ENST00000436565 3076 ntBASIC5.8□□□□□ -1.48
HMGB1P09429 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HMGB1P09429 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HMGB1P09429 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
HMGB1P09429 AC108467.2-201ENST00000617640 1597 ntBASIC5.8□□□□□ -1.48
HMGB1P09429 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC5.8□□□□□ -1.48
HMGB1P09429 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HMGB1P09429 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HMGB1P09429 AF127577.6-201ENST00000623352 2191 ntBASIC5.79□□□□□ -1.48
HMGB1P09429 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC5.79□□□□□ -1.48
HMGB1P09429 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HMGB1P09429 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
HMGB1P09429 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
HMGB1P09429 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HMGB1P09429 AMELX-201ENST00000348912 737 ntTSL 5 BASIC5.79□□□□□ -1.48
HMGB1P09429 CRP-202ENST00000368110 667 ntTSL 3 BASIC5.79□□□□□ -1.48
HMGB1P09429 SNORA70-201ENST00000384436 135 ntBASIC5.79□□□□□ -1.48
HMGB1P09429 RNU6-712P-201ENST00000410558 100 ntBASIC5.79□□□□□ -1.48
HMGB1P09429 RN7SKP213-201ENST00000410746 298 ntBASIC5.79□□□□□ -1.48
HMGB1P09429 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC5.79□□□□□ -1.48
HMGB1P09429 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC5.79□□□□□ -1.48
HMGB1P09429 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC5.79□□□□□ -1.48
HMGB1P09429 NANOGP2-201ENST00000435391 727 ntBASIC5.79□□□□□ -1.48
HMGB1P09429 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC5.79□□□□□ -1.48
HMGB1P09429 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC5.79□□□□□ -1.48
HMGB1P09429 HMGB1P15-201ENST00000453854 435 ntBASIC5.79□□□□□ -1.48
HMGB1P09429 VN1R17P-201ENST00000472048 1090 ntBASIC5.79□□□□□ -1.48
HMGB1P09429 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC5.79□□□□□ -1.48
HMGB1P09429 AC004815.1-201ENST00000484185 331 ntBASIC5.79□□□□□ -1.48
HMGB1P09429 AC083982.1-201ENST00000485679 344 ntBASIC5.79□□□□□ -1.48
HMGB1P09429 SETP14-201ENST00000497538 873 ntBASIC5.79□□□□□ -1.48
HMGB1P09429 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HMGB1P09429 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC5.79□□□□□ -1.48
HMGB1P09429 ACTR3BP4-201ENST00000503033 1244 ntBASIC5.79□□□□□ -1.48
HMGB1P09429 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC5.79□□□□□ -1.48
HMGB1P09429 AC125611.1-201ENST00000549563 229 ntBASIC5.79□□□□□ -1.48
HMGB1P09429 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC5.79□□□□□ -1.48
HMGB1P09429 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC5.79□□□□□ -1.48
HMGB1P09429 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC5.79□□□□□ -1.48
HMGB1P09429 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC5.79□□□□□ -1.48
HMGB1P09429 CYCSP40-201ENST00000575927 294 ntBASIC5.79□□□□□ -1.48
HMGB1P09429 BNIP3P24-201ENST00000593398 557 ntBASIC5.79□□□□□ -1.48
HMGB1P09429 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC5.79□□□□□ -1.48
HMGB1P09429 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HMGB1P09429 AC092650.2-201ENST00000619984 902 ntBASIC5.79□□□□□ -1.48
HMGB1P09429 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HMGB1P09429 AC091925.2-201ENST00000625059 256 ntBASIC5.79□□□□□ -1.48
HMGB1P09429 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC5.79□□□□□ -1.48
HMGB1P09429 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
HMGB1P09429 AC244517.1-201ENST00000606030 2086 ntBASIC5.79□□□□□ -1.48
HMGB1P09429 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HMGB1P09429 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.79□□□□□ -1.48
HMGB1P09429 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
HMGB1P09429 C4BPAP1-201ENST00000415474 1893 ntBASIC5.79□□□□□ -1.48
HMGB1P09429 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms