Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 SRRM1P3-201ENST00000426911 2678 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 LINC01963-201ENST00000562038 3148 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AC135352.1-201ENST00000506173 1418 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 MIR606-201ENST00000384851 96 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 MIR621-201ENST00000384919 96 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 MIR551A-201ENST00000385042 96 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 CYCSP45-201ENST00000402289 315 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 OR2AT2P-201ENST00000413438 905 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 MTND3P17-201ENST00000416968 344 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AL161631.1-201ENST00000417933 486 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 RPL34P3-201ENST00000421454 338 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 MTCO1P3-201ENST00000429327 192 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AL365184.2-201ENST00000431139 435 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 FMO7P-201ENST00000436045 768 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AC239367.2-201ENST00000447309 705 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 RPL23AP35-201ENST00000451906 501 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AZGP1P2-201ENST00000454506 345 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 ST13P14-201ENST00000474095 734 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 SELENOT-204ENST00000480740 783 ntTSL 3 BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AC108078.1-201ENST00000508073 725 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AC109481.1-201ENST00000509173 282 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AC110792.2-201ENST00000510278 224 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 EIF3KP3-201ENST00000514461 639 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 MTND1P35-201ENST00000526739 508 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AC027369.5-201ENST00000533838 755 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AC005832.3-201ENST00000537929 631 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AL355836.1-201ENST00000555951 870 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 PCMTD1P2-201ENST00000565017 355 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AC034268.2-201ENST00000571784 482 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AP000238.1-201ENST00000608759 426 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AC025574.2-201ENST00000615621 514 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AC069209.1-201ENST00000619282 651 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AC024940.5-201ENST00000622889 474 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 BANCR-201ENST00000624238 473 ntTSL 2 BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 OSBPL9P1-201ENST00000604744 1469 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 AC138393.1-206ENST00000540997 1886 ntBASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC39Q9UFE4 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 OR4G11P-202ENST00000642116 1414 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 MTCO1P11-201ENST00000429111 1528 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 Z95331.1-201ENST00000623075 23112 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 AC073055.1-201ENST00000456901 1621 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 Y_RNA.138-201ENST00000363462 102 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 PPIAP9-201ENST00000403866 498 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 GAPDHP42-201ENST00000406848 981 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 AIMP1P1-201ENST00000418670 937 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 AC007161.1-204ENST00000423039 460 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 RPL19P16-201ENST00000433839 588 ntBASIC6.25□□□□□ -1.41
CCDC39Q9UFE4 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC6.25□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms