Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC023128.2-201ENST00000420880 1223 ntBASIC3.65□□□□□ -1.83
SKA3Q8IX90 AL159169.1-201ENST00000421119 127 ntBASIC3.65□□□□□ -1.83
SKA3Q8IX90 AL606495.1-201ENST00000422100 813 ntBASIC3.65□□□□□ -1.83
SKA3Q8IX90 RPS26P40-201ENST00000435209 294 ntBASIC3.65□□□□□ -1.83
SKA3Q8IX90 AP000949.1-201ENST00000438328 629 ntBASIC3.65□□□□□ -1.83
SKA3Q8IX90 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
SKA3Q8IX90 AC010618.1-201ENST00000469924 477 ntBASIC3.65□□□□□ -1.83
SKA3Q8IX90 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
SKA3Q8IX90 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.65□□□□□ -1.83
SKA3Q8IX90 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.83
SKA3Q8IX90 AC093824.1-201ENST00000508796 343 ntBASIC3.65□□□□□ -1.83
SKA3Q8IX90 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
SKA3Q8IX90 RFESD-208ENST00000513950 464 ntTSL 5 BASIC3.65□□□□□ -1.83
SKA3Q8IX90 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC3.65□□□□□ -1.83
SKA3Q8IX90 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC3.65□□□□□ -1.83
SKA3Q8IX90 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC3.65□□□□□ -1.83
SKA3Q8IX90 AP003730.1-201ENST00000524605 285 ntBASIC3.65□□□□□ -1.83
SKA3Q8IX90 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC3.65□□□□□ -1.83
SKA3Q8IX90 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC3.65□□□□□ -1.83
SKA3Q8IX90 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC3.65□□□□□ -1.83
SKA3Q8IX90 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.65□□□□□ -1.83
SKA3Q8IX90 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC3.65□□□□□ -1.83
SKA3Q8IX90 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC3.65□□□□□ -1.83
SKA3Q8IX90 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC3.65□□□□□ -1.83
SKA3Q8IX90 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC3.65□□□□□ -1.83
SKA3Q8IX90 MIR378J-201ENST00000611988 109 ntBASIC3.65□□□□□ -1.83
SKA3Q8IX90 AC243654.2-201ENST00000612843 443 ntBASIC3.65□□□□□ -1.83
SKA3Q8IX90 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
SKA3Q8IX90 MIR8059-201ENST00000620427 81 ntBASIC3.65□□□□□ -1.83
SKA3Q8IX90 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC3.65□□□□□ -1.83
SKA3Q8IX90 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC3.65□□□□□ -1.83
SKA3Q8IX90 LGI1-209ENST00000627699 664 ntTSL 3 BASIC3.65□□□□□ -1.83
SKA3Q8IX90 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC3.65□□□□□ -1.83
SKA3Q8IX90 MIR6830-201ENST00000636015 70 ntBASIC3.65□□□□□ -1.83
SKA3Q8IX90 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
SKA3Q8IX90 AC092162.3-201ENST00000624511 1624 ntBASIC3.65□□□□□ -1.83
SKA3Q8IX90 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.65□□□□□ -1.83
SKA3Q8IX90 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
SKA3Q8IX90 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
SKA3Q8IX90 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
SKA3Q8IX90 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 MAPK10-373ENST00000641983 6772 ntBASIC3.64□□□□□ -1.83
SKA3Q8IX90 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
SKA3Q8IX90 XIAPP3-201ENST00000312918 795 ntBASIC3.64□□□□□ -1.83
SKA3Q8IX90 RNA5SP443-201ENST00000363083 132 ntBASIC3.64□□□□□ -1.83
SKA3Q8IX90 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 ATF1P1-201ENST00000406040 927 ntBASIC3.64□□□□□ -1.83
SKA3Q8IX90 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 AC009965.2-201ENST00000425328 970 ntBASIC3.64□□□□□ -1.83
SKA3Q8IX90 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 UBE2D3P3-201ENST00000426992 425 ntBASIC3.64□□□□□ -1.83
SKA3Q8IX90 USP12PY-201ENST00000427677 1064 ntBASIC3.64□□□□□ -1.83
SKA3Q8IX90 C4BPAP2-201ENST00000428434 478 ntBASIC3.64□□□□□ -1.83
SKA3Q8IX90 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 TPTE2P6-202ENST00000445572 1007 ntBASIC3.64□□□□□ -1.83
SKA3Q8IX90 MTND2P8-201ENST00000450555 1025 ntBASIC3.64□□□□□ -1.83
SKA3Q8IX90 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 RNA5SP246-201ENST00000458909 119 ntBASIC3.64□□□□□ -1.83
SKA3Q8IX90 RPS23P7-201ENST00000466210 444 ntBASIC3.64□□□□□ -1.83
SKA3Q8IX90 AC011037.1-201ENST00000483964 558 ntBASIC3.64□□□□□ -1.83
SKA3Q8IX90 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 CEACAMP10-202ENST00000495431 496 ntBASIC3.64□□□□□ -1.83
SKA3Q8IX90 SNORA31.9-201ENST00000516429 84 ntBASIC3.64□□□□□ -1.83
SKA3Q8IX90 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 MTND1P36-201ENST00000522384 936 ntBASIC3.64□□□□□ -1.83
SKA3Q8IX90 OR5AK3P-201ENST00000527486 1297 ntBASIC3.64□□□□□ -1.83
SKA3Q8IX90 AC113192.3-201ENST00000529152 742 ntBASIC3.64□□□□□ -1.83
SKA3Q8IX90 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 AC069366.1-201ENST00000583159 838 ntBASIC3.64□□□□□ -1.83
SKA3Q8IX90 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
SKA3Q8IX90 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
SKA3Q8IX90 RMST_10.1-201ENST00000616309 154 ntBASIC3.64□□□□□ -1.83
SKA3Q8IX90 AC009318.3-201ENST00000616916 503 ntBASIC3.64□□□□□ -1.83
SKA3Q8IX90 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 TMEM161BP1-201ENST00000457388 1457 ntBASIC3.64□□□□□ -1.83
SKA3Q8IX90 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.64□□□□□ -1.83
SKA3Q8IX90 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
SKA3Q8IX90 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
SKA3Q8IX90 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
SKA3Q8IX90 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.63□□□□□ -1.83
SKA3Q8IX90 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.63□□□□□ -1.83
SKA3Q8IX90 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
SKA3Q8IX90 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms