Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC2.74□□□□□ -1.97
FOXA3P55318 AC021205.1-201ENST00000468797 348 ntBASIC2.74□□□□□ -1.97
FOXA3P55318 AC022034.3-201ENST00000471393 478 ntBASIC2.74□□□□□ -1.97
FOXA3P55318 RN7SL442P-201ENST00000473804 320 ntBASIC2.74□□□□□ -1.97
FOXA3P55318 AC008638.1-201ENST00000506035 866 ntBASIC2.74□□□□□ -1.97
FOXA3P55318 AC025674.1-201ENST00000507074 324 ntBASIC2.74□□□□□ -1.97
FOXA3P55318 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC2.74□□□□□ -1.97
FOXA3P55318 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC2.74□□□□□ -1.97
FOXA3P55318 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
FOXA3P55318 AC010265.1-201ENST00000513509 211 ntBASIC2.74□□□□□ -1.97
FOXA3P55318 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC2.74□□□□□ -1.97
FOXA3P55318 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC2.74□□□□□ -1.97
FOXA3P55318 AC138701.1-201ENST00000524329 714 ntBASIC2.74□□□□□ -1.97
FOXA3P55318 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
FOXA3P55318 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC2.74□□□□□ -1.97
FOXA3P55318 AC008011.1-201ENST00000545989 227 ntBASIC2.74□□□□□ -1.97
FOXA3P55318 AP005901.4-201ENST00000577336 569 ntBASIC2.74□□□□□ -1.97
FOXA3P55318 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC2.74□□□□□ -1.97
FOXA3P55318 AC099778.2-201ENST00000610904 211 ntBASIC2.74□□□□□ -1.97
FOXA3P55318 MIR6719-201ENST00000622428 87 ntBASIC2.74□□□□□ -1.97
FOXA3P55318 AP003072.4-201ENST00000624580 310 ntBASIC2.74□□□□□ -1.97
FOXA3P55318 AC048347.1-201ENST00000624621 427 ntBASIC2.74□□□□□ -1.97
FOXA3P55318 SNORA50A-202ENST00000629536 136 ntBASIC2.74□□□□□ -1.97
FOXA3P55318 IPO5-229ENST00000631030 192 ntTSL 5 BASIC2.74□□□□□ -1.97
FOXA3P55318 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
FOXA3P55318 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC2.74□□□□□ -1.97
FOXA3P55318 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
FOXA3P55318 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
FOXA3P55318 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC2.74□□□□□ -1.97
FOXA3P55318 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
FOXA3P55318 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC2.73□□□□□ -1.97
FOXA3P55318 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
FOXA3P55318 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
FOXA3P55318 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
FOXA3P55318 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC2.73□□□□□ -1.97
FOXA3P55318 AC139713.2-214ENST00000642059 1811 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC2.73□□□□□ -1.97
FOXA3P55318 IGKV7-3-201ENST00000357453 298 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 MIR383-201ENST00000362257 73 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 AC093578.1-201ENST00000415219 368 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 ZNF736P2Y-201ENST00000416040 1279 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 Z97055.1-201ENST00000419730 712 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 GTF2IP23-201ENST00000423746 351 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 AC244033.1-201ENST00000426826 870 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 AL390879.2-203ENST00000426943 1121 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 AP000907.1-201ENST00000428428 510 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 MRPL50P1-201ENST00000431951 384 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 UBE2V2P4-201ENST00000447495 259 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC2.73□□□□□ -1.97
FOXA3P55318 Z95152.1-201ENST00000453556 656 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 ANK3-207ENST00000460468 677 ntTSL 3 BASIC2.73□□□□□ -1.97
FOXA3P55318 RPL23AP44-201ENST00000482216 473 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC2.73□□□□□ -1.97
FOXA3P55318 AC021146.5-201ENST00000503544 545 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC2.73□□□□□ -1.97
FOXA3P55318 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC2.73□□□□□ -1.97
FOXA3P55318 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC2.73□□□□□ -1.97
FOXA3P55318 RNU2-27P-201ENST00000516185 142 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 RNU4ATAC15P-201ENST00000516415 126 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 RNU4ATAC3P-201ENST00000516699 126 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 AC022695.1-201ENST00000522089 237 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC2.73□□□□□ -1.97
FOXA3P55318 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC2.73□□□□□ -1.97
FOXA3P55318 AC006518.1-201ENST00000541449 943 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC2.73□□□□□ -1.97
FOXA3P55318 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC2.73□□□□□ -1.97
FOXA3P55318 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC2.73□□□□□ -1.97
FOXA3P55318 RN7SL753P-201ENST00000581238 290 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 RN7SL600P-201ENST00000581811 299 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC2.73□□□□□ -1.97
FOXA3P55318 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC2.73□□□□□ -1.97
FOXA3P55318 IGKV1OR2-118-201ENST00000603238 347 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 AP003117.2-201ENST00000606010 545 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 AC007620.3-201ENST00000608131 497 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 AP000894.4-201ENST00000610185 483 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 AC022149.2-201ENST00000621061 203 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 PLCE1P1-201ENST00000622094 305 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 AL732618.1-201ENST00000623251 301 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 MIR3653-201ENST00000625572 110 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC2.73□□□□□ -1.97
FOXA3P55318 AC021755.1-201ENST00000559747 1447 ntBASIC2.73□□□□□ -1.97
FOXA3P55318 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
FOXA3P55318 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC2.72□□□□□ -1.97
FOXA3P55318 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC2.72□□□□□ -1.97
FOXA3P55318 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
FOXA3P55318 AC004972.1-201ENST00000623934 2209 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
FOXA3P55318 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
FOXA3P55318 SNORA31-201ENST00000362607 130 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC2.72□□□□□ -1.97
FOXA3P55318 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC2.72□□□□□ -1.97
FOXA3P55318 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
FOXA3P55318 RPS27AP11-201ENST00000402798 447 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
FOXA3P55318 U3.39-201ENST00000408569 239 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 RNU4-6P-201ENST00000410804 122 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 RANP4-201ENST00000413361 655 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 AC068533.1-201ENST00000418542 415 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 NEK4P1-201ENST00000433383 879 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 AL356276.2-201ENST00000435919 558 ntBASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms