Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
COL18A1P39060 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.48□□□□□ -1.69
COL18A1P39060 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL18A1P39060 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.48□□□□□ -1.69
COL18A1P39060 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL18A1P39060 SNORD74.4-201ENST00000364129 80 ntBASIC4.48□□□□□ -1.69
COL18A1P39060 RNU1-140P-201ENST00000365040 165 ntBASIC4.48□□□□□ -1.69
COL18A1P39060 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC4.48□□□□□ -1.69
COL18A1P39060 Z99755.1-201ENST00000414048 380 ntBASIC4.48□□□□□ -1.69
COL18A1P39060 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC4.48□□□□□ -1.69
COL18A1P39060 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
COL18A1P39060 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.48□□□□□ -1.69
COL18A1P39060 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC4.48□□□□□ -1.69
COL18A1P39060 AC074367.1-201ENST00000438685 1125 ntBASIC4.48□□□□□ -1.69
COL18A1P39060 ANP32BP2-201ENST00000454525 545 ntBASIC4.48□□□□□ -1.69
COL18A1P39060 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC4.48□□□□□ -1.69
COL18A1P39060 AC113192.3-201ENST00000529152 742 ntBASIC4.48□□□□□ -1.69
COL18A1P39060 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC4.48□□□□□ -1.69
COL18A1P39060 SNORD39.4-201ENST00000620099 78 ntBASIC4.48□□□□□ -1.69
COL18A1P39060 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.47□□□□□ -1.69
COL18A1P39060 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL18A1P39060 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL18A1P39060 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
COL18A1P39060 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.47□□□□□ -1.69
COL18A1P39060 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL18A1P39060 UBE2V1P2-201ENST00000397758 440 ntBASIC4.47□□□□□ -1.69
COL18A1P39060 RN7SKP284-201ENST00000411002 343 ntBASIC4.47□□□□□ -1.69
COL18A1P39060 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.47□□□□□ -1.69
COL18A1P39060 RN7SL863P-201ENST00000462370 296 ntBASIC4.47□□□□□ -1.69
COL18A1P39060 AC023598.1-201ENST00000472521 361 ntBASIC4.47□□□□□ -1.69
COL18A1P39060 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.47□□□□□ -1.69
COL18A1P39060 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC4.47□□□□□ -1.69
COL18A1P39060 AC004024.1-201ENST00000549244 247 ntBASIC4.47□□□□□ -1.69
COL18A1P39060 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC4.47□□□□□ -1.69
COL18A1P39060 AC018690.1-201ENST00000608144 626 ntBASIC4.47□□□□□ -1.69
COL18A1P39060 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC4.47□□□□□ -1.69
COL18A1P39060 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
COL18A1P39060 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.47□□□□□ -1.69
COL18A1P39060 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL18A1P39060 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
COL18A1P39060 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.46□□□□□ -1.69
COL18A1P39060 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
COL18A1P39060 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
COL18A1P39060 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL18A1P39060 RNA5SP432-201ENST00000362480 116 ntBASIC4.46□□□□□ -1.7
COL18A1P39060 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC4.46□□□□□ -1.7
COL18A1P39060 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC4.46□□□□□ -1.7
COL18A1P39060 ELOCP18-201ENST00000434209 337 ntBASIC4.46□□□□□ -1.7
COL18A1P39060 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
COL18A1P39060 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC4.46□□□□□ -1.7
COL18A1P39060 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC4.46□□□□□ -1.7
COL18A1P39060 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL18A1P39060 AC110794.1-201ENST00000505816 425 ntBASIC4.46□□□□□ -1.7
COL18A1P39060 OR5AP1P-201ENST00000529730 940 ntBASIC4.46□□□□□ -1.7
COL18A1P39060 DUXAP6-201ENST00000553858 601 ntBASIC4.46□□□□□ -1.7
COL18A1P39060 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC4.46□□□□□ -1.7
COL18A1P39060 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC4.46□□□□□ -1.7
COL18A1P39060 AC100793.4-201ENST00000613683 429 ntBASIC4.46□□□□□ -1.7
COL18A1P39060 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL18A1P39060 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.46□□□□□ -1.7
COL18A1P39060 OR51C1P-202ENST00000641159 1444 ntBASIC4.46□□□□□ -1.7
COL18A1P39060 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL18A1P39060 AC008079.2-201ENST00000623543 20396 ntBASIC4.46□□□□□ -1.7
COL18A1P39060 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.46□□□□□ -1.7
COL18A1P39060 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL18A1P39060 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
COL18A1P39060 HSPA8P17-201ENST00000427029 1382 ntBASIC4.46□□□□□ -1.7
COL18A1P39060 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC4.45□□□□□ -1.7
COL18A1P39060 MIR93-201ENST00000385024 80 ntBASIC4.45□□□□□ -1.7
COL18A1P39060 RNU4-47P-201ENST00000410876 114 ntBASIC4.45□□□□□ -1.7
COL18A1P39060 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC4.45□□□□□ -1.7
COL18A1P39060 AC107083.1-201ENST00000439643 279 ntBASIC4.45□□□□□ -1.7
COL18A1P39060 AC008885.1-201ENST00000514930 301 ntBASIC4.45□□□□□ -1.7
COL18A1P39060 RNA5SP154-201ENST00000516193 111 ntBASIC4.45□□□□□ -1.7
COL18A1P39060 HIGD1AP1-201ENST00000550979 275 ntBASIC4.45□□□□□ -1.7
COL18A1P39060 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL18A1P39060 AL451007.1-201ENST00000595491 289 ntBASIC4.45□□□□□ -1.7
COL18A1P39060 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL18A1P39060 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL18A1P39060 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL18A1P39060 BTBD10P1-201ENST00000549824 1352 ntBASIC4.45□□□□□ -1.7
COL18A1P39060 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL18A1P39060 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL18A1P39060 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
COL18A1P39060 USP12PY-201ENST00000427677 1064 ntBASIC4.45□□□□□ -1.7
COL18A1P39060 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC4.45□□□□□ -1.7
COL18A1P39060 AP000926.4-201ENST00000527351 454 ntBASIC4.45□□□□□ -1.7
COL18A1P39060 AC026333.2-201ENST00000542164 106 ntBASIC4.45□□□□□ -1.7
COL18A1P39060 RDM1-219ENST00000615378 542 ntTSL 3 BASIC4.45□□□□□ -1.7
COL18A1P39060 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL18A1P39060 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL18A1P39060 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC4.44□□□□□ -1.7
COL18A1P39060 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC4.44□□□□□ -1.7
COL18A1P39060 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.44□□□□□ -1.7
COL18A1P39060 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL18A1P39060 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL18A1P39060 IARS-201ENST00000375627 697 ntTSL 3 BASIC4.44□□□□□ -1.7
COL18A1P39060 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC4.44□□□□□ -1.7
COL18A1P39060 AC008065.1-201ENST00000428525 348 ntBASIC4.44□□□□□ -1.7
COL18A1P39060 RPSAP41-201ENST00000439695 860 ntBASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 83.9 ms