Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC074051.3-201ENST00000570238 358 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 MIR3934-201ENST00000579806 107 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXD3P31249 MIR4480-201ENST00000582492 71 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 MIR548AB-201ENST00000584917 84 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXD3P31249 AC087683.1-201ENST00000591187 441 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 AC104785.1-201ENST00000603220 588 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 AC123786.2-201ENST00000603459 275 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 AC095055.1-201ENST00000603472 1113 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 ELOCP34-201ENST00000604436 327 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 AC069304.2-201ENST00000605154 435 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 AC068276.1-201ENST00000605793 379 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 AC090186.1-201ENST00000605991 572 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 AC234782.5-201ENST00000617723 324 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 AC091953.3-201ENST00000623220 236 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXD3P31249 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXD3P31249 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXD3P31249 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXD3P31249 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXD3P31249 AC004158.1-201ENST00000564508 4319 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
HOXD3P31249 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXD3P31249 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXD3P31249 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
HOXD3P31249 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXD3P31249 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXD3P31249 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
HOXD3P31249 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXD3P31249 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXD3P31249 AP000542.2-201ENST00000623199 6179 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXD3P31249 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
HOXD3P31249 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD3P31249 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD3P31249 MTCO1P14-201ENST00000441695 1559 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
HOXD3P31249 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
HOXD3P31249 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.06□□□□□ -1.76
HOXD3P31249 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD3P31249 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD3P31249 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD3P31249 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXD3P31249 RMST-209ENST00000639542 3269 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXD3P31249 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
HOXD3P31249 RNA5SP453-201ENST00000362503 119 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 SNORA17.1-201ENST00000362945 126 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 RNU6-216P-201ENST00000363282 104 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 RN7SKP153-201ENST00000365026 316 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 MIR92A2-201ENST00000385299 75 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD3P31249 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD3P31249 DNAJA1P4-201ENST00000406473 1166 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXD3P31249 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXD3P31249 AC092647.1-201ENST00000420654 287 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXD3P31249 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXD3P31249 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXD3P31249 HNRNPA1P29-201ENST00000426409 879 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXD3P31249 AC010881.1-201ENST00000433830 235 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC4.06□□□□□ -1.76
HOXD3P31249 EEF1E1P1-201ENST00000446998 430 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXD3P31249 SLC31A1P1-201ENST00000451221 567 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXD3P31249 HIGD1AP8-201ENST00000453927 274 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 Z92846.1-201ENST00000456203 268 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 AP000797.2-201ENST00000475768 606 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC4.06□□□□□ -1.76
HOXD3P31249 GTF2F2P1-201ENST00000511083 675 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 AC004980.4-201ENST00000513375 203 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 RNA5SP373-201ENST00000517271 95 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 AC022360.1-201ENST00000521058 340 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXD3P31249 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXD3P31249 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXD3P31249 AC090502.2-201ENST00000549267 280 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXD3P31249 FAM25E-202ENST00000608562 189 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 AP001521.1-201ENST00000609150 300 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXD3P31249 AL121873.1-201ENST00000616013 524 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXD3P31249 AL356121.2-201ENST00000624715 780 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 AC025048.6-202ENST00000627667 438 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXD3P31249 AC026634.1-201ENST00000634369 198 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXD3P31249 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD3P31249 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXD3P31249 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXD3P31249 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD3P31249 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXD3P31249 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD3P31249 AL079343.1-201ENST00000572358 1771 ntBASIC4.06□□□□□ -1.76
HOXD3P31249 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
HOXD3P31249 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms