Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.29□□□□□ -1.72
COL5A3P25940 FTH1P9-201ENST00000513251 355 ntBASIC4.29□□□□□ -1.72
COL5A3P25940 AC233702.9-201ENST00000581528 203 ntBASIC4.29□□□□□ -1.72
COL5A3P25940 AC015802.5-201ENST00000607478 399 ntBASIC4.29□□□□□ -1.72
COL5A3P25940 OR6C71P-202ENST00000641886 1107 ntBASIC4.29□□□□□ -1.72
COL5A3P25940 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL5A3P25940 Z95331.1-201ENST00000623075 23112 ntBASIC4.29□□□□□ -1.72
COL5A3P25940 AP000542.2-201ENST00000623199 6179 ntBASIC4.29□□□□□ -1.72
COL5A3P25940 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL5A3P25940 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.29□□□□□ -1.72
COL5A3P25940 OTUD4P1-201ENST00000237841 3067 ntBASIC4.29□□□□□ -1.72
COL5A3P25940 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
COL5A3P25940 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL5A3P25940 SNORD74.4-201ENST00000364129 80 ntBASIC4.29□□□□□ -1.72
COL5A3P25940 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC4.29□□□□□ -1.72
COL5A3P25940 HMGN1P24-201ENST00000412282 298 ntBASIC4.29□□□□□ -1.72
COL5A3P25940 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.29□□□□□ -1.72
COL5A3P25940 HMGB3P22-202ENST00000451823 572 ntBASIC4.29□□□□□ -1.72
COL5A3P25940 RPS26P15-201ENST00000488067 348 ntBASIC4.29□□□□□ -1.72
COL5A3P25940 AC025445.1-201ENST00000502728 300 ntBASIC4.29□□□□□ -1.72
COL5A3P25940 PRELID3BP6-201ENST00000503839 571 ntBASIC4.29□□□□□ -1.72
COL5A3P25940 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC4.29□□□□□ -1.72
COL5A3P25940 AC110794.1-201ENST00000505816 425 ntBASIC4.29□□□□□ -1.72
COL5A3P25940 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.29□□□□□ -1.72
COL5A3P25940 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC4.29□□□□□ -1.72
COL5A3P25940 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.29□□□□□ -1.72
COL5A3P25940 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC4.29□□□□□ -1.72
COL5A3P25940 OR5AP1P-201ENST00000529730 940 ntBASIC4.29□□□□□ -1.72
COL5A3P25940 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC4.29□□□□□ -1.72
COL5A3P25940 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL5A3P25940 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC4.29□□□□□ -1.72
COL5A3P25940 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
COL5A3P25940 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL5A3P25940 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL5A3P25940 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.28□□□□□ -1.72
COL5A3P25940 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.28□□□□□ -1.72
COL5A3P25940 AC027290.2-201ENST00000623210 18662 ntBASIC4.28□□□□□ -1.72
COL5A3P25940 AC017078.1-201ENST00000416146 368 ntBASIC4.28□□□□□ -1.72
COL5A3P25940 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
COL5A3P25940 USP12PY-201ENST00000427677 1064 ntBASIC4.28□□□□□ -1.72
COL5A3P25940 ATP5C1P1-201ENST00000441945 895 ntBASIC4.28□□□□□ -1.72
COL5A3P25940 AC022795.1-201ENST00000473808 480 ntBASIC4.28□□□□□ -1.72
COL5A3P25940 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC4.28□□□□□ -1.72
COL5A3P25940 HIGD1AP1-201ENST00000550979 275 ntBASIC4.28□□□□□ -1.72
COL5A3P25940 CR383656.14-201ENST00000551951 406 ntBASIC4.28□□□□□ -1.72
COL5A3P25940 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL5A3P25940 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL5A3P25940 OR51C1P-202ENST00000641159 1444 ntBASIC4.28□□□□□ -1.72
COL5A3P25940 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL5A3P25940 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL5A3P25940 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL5A3P25940 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL5A3P25940 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL5A3P25940 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.27□□□□□ -1.73
COL5A3P25940 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.27□□□□□ -1.73
COL5A3P25940 ZNF807-201ENST00000328088 1707 ntBASIC4.27□□□□□ -1.73
COL5A3P25940 NPM1P38-201ENST00000403835 865 ntBASIC4.27□□□□□ -1.73
COL5A3P25940 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC4.27□□□□□ -1.73
COL5A3P25940 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC4.27□□□□□ -1.73
COL5A3P25940 AC023598.1-201ENST00000472521 361 ntBASIC4.27□□□□□ -1.73
COL5A3P25940 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC4.27□□□□□ -1.73
COL5A3P25940 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC4.27□□□□□ -1.73
COL5A3P25940 APOOP4-201ENST00000513530 597 ntBASIC4.27□□□□□ -1.73
COL5A3P25940 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.27□□□□□ -1.73
COL5A3P25940 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC4.27□□□□□ -1.73
COL5A3P25940 AL121603.1-201ENST00000553815 142 ntBASIC4.27□□□□□ -1.73
COL5A3P25940 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC4.27□□□□□ -1.73
COL5A3P25940 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC4.27□□□□□ -1.73
COL5A3P25940 AP005205.1-201ENST00000563503 508 ntBASIC4.27□□□□□ -1.73
COL5A3P25940 AC034105.3-201ENST00000565294 442 ntBASIC4.27□□□□□ -1.73
COL5A3P25940 AC110801.1-201ENST00000623590 212 ntBASIC4.27□□□□□ -1.73
COL5A3P25940 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
COL5A3P25940 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC4.27□□□□□ -1.73
COL5A3P25940 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC4.27□□□□□ -1.73
COL5A3P25940 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.27□□□□□ -1.73
COL5A3P25940 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL5A3P25940 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.27□□□□□ -1.73
COL5A3P25940 KIF14-202ENST00000614960 6838 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL5A3P25940 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL5A3P25940 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.27□□□□□ -1.73
COL5A3P25940 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL5A3P25940 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC4.26□□□□□ -1.73
COL5A3P25940 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC4.26□□□□□ -1.73
COL5A3P25940 AC093698.1-201ENST00000423843 571 ntBASIC4.26□□□□□ -1.73
COL5A3P25940 AC000041.1-201ENST00000439655 175 ntBASIC4.26□□□□□ -1.73
COL5A3P25940 RPL7P48-201ENST00000461513 746 ntBASIC4.26□□□□□ -1.73
COL5A3P25940 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL5A3P25940 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL5A3P25940 BTF3L4P4-201ENST00000506381 449 ntBASIC4.26□□□□□ -1.73
COL5A3P25940 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC4.26□□□□□ -1.73
COL5A3P25940 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.26□□□□□ -1.73
COL5A3P25940 AP000926.4-201ENST00000527351 454 ntBASIC4.26□□□□□ -1.73
COL5A3P25940 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC4.26□□□□□ -1.73
COL5A3P25940 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC4.26□□□□□ -1.73
COL5A3P25940 AL121766.1-201ENST00000547436 487 ntBASIC4.26□□□□□ -1.73
COL5A3P25940 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.26□□□□□ -1.73
COL5A3P25940 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC4.26□□□□□ -1.73
COL5A3P25940 LARP7P3-201ENST00000579888 337 ntBASIC4.26□□□□□ -1.73
COL5A3P25940 SCARNA15.3-201ENST00000626315 122 ntBASIC4.26□□□□□ -1.73
COL5A3P25940 SCARNA4.1-201ENST00000628597 123 ntBASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms