Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 OR5M14P-201ENST00000506803 618 ntBASIC4.71□□□□□ -1.66
HOXA3O43365 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC4.71□□□□□ -1.66
HOXA3O43365 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC4.71□□□□□ -1.66
HOXA3O43365 UBE2Q2P10-201ENST00000514854 900 ntBASIC4.71□□□□□ -1.66
HOXA3O43365 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC4.71□□□□□ -1.66
HOXA3O43365 Y_RNA.693-201ENST00000516641 110 ntBASIC4.71□□□□□ -1.66
HOXA3O43365 SNORA43.3-201ENST00000517240 103 ntBASIC4.71□□□□□ -1.66
HOXA3O43365 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC4.71□□□□□ -1.66
HOXA3O43365 IGLV3-30-201ENST00000524362 298 ntBASIC4.71□□□□□ -1.66
HOXA3O43365 ARL6IP1P3-201ENST00000524544 560 ntBASIC4.71□□□□□ -1.66
HOXA3O43365 ZNF705CP-201ENST00000530515 889 ntBASIC4.71□□□□□ -1.66
HOXA3O43365 LDHC-203ENST00000535809 757 ntTSL 5 BASIC4.71□□□□□ -1.66
HOXA3O43365 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC4.71□□□□□ -1.66
HOXA3O43365 RAB11AP2-201ENST00000545905 639 ntBASIC4.71□□□□□ -1.66
HOXA3O43365 LSM6P2-201ENST00000552208 177 ntBASIC4.71□□□□□ -1.66
HOXA3O43365 IGBP1P1-201ENST00000554337 1009 ntBASIC4.71□□□□□ -1.66
HOXA3O43365 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC4.71□□□□□ -1.66
HOXA3O43365 AC007494.1-201ENST00000562293 760 ntBASIC4.71□□□□□ -1.66
HOXA3O43365 AL845331.3-202ENST00000562856 261 ntBASIC4.71□□□□□ -1.66
HOXA3O43365 AC034268.2-201ENST00000571784 482 ntBASIC4.71□□□□□ -1.66
HOXA3O43365 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC4.71□□□□□ -1.66
HOXA3O43365 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC4.71□□□□□ -1.66
HOXA3O43365 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC4.71□□□□□ -1.66
HOXA3O43365 AC012507.3-201ENST00000603556 477 ntBASIC4.71□□□□□ -1.66
HOXA3O43365 AC013244.1-201ENST00000604279 193 ntBASIC4.71□□□□□ -1.66
HOXA3O43365 AC011816.2-201ENST00000607089 556 ntBASIC4.71□□□□□ -1.66
HOXA3O43365 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC4.71□□□□□ -1.66
HOXA3O43365 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC4.71□□□□□ -1.66
HOXA3O43365 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.71□□□□□ -1.66
HOXA3O43365 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC4.71□□□□□ -1.66
HOXA3O43365 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC4.71□□□□□ -1.66
HOXA3O43365 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HOXA3O43365 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC4.71□□□□□ -1.66
HOXA3O43365 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC4.71□□□□□ -1.66
HOXA3O43365 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HOXA3O43365 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC4.71□□□□□ -1.66
HOXA3O43365 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
HOXA3O43365 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
HOXA3O43365 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
HOXA3O43365 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HOXA3O43365 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
HOXA3O43365 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC4.71□□□□□ -1.66
HOXA3O43365 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC4.71□□□□□ -1.66
HOXA3O43365 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HOXA3O43365 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC4.71□□□□□ -1.66
HOXA3O43365 AP000473.2-201ENST00000602659 1537 ntBASIC4.71□□□□□ -1.66
HOXA3O43365 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HOXA3O43365 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC4.71□□□□□ -1.66
HOXA3O43365 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC4.71□□□□□ -1.66
HOXA3O43365 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HOXA3O43365 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
HOXA3O43365 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
HOXA3O43365 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HOXA3O43365 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HOXA3O43365 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
HOXA3O43365 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
HOXA3O43365 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
HOXA3O43365 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC4.7□□□□□ -1.66
HOXA3O43365 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
HOXA3O43365 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
HOXA3O43365 RN7SKP160-201ENST00000363804 340 ntBASIC4.7□□□□□ -1.66
HOXA3O43365 RN7SKP186-201ENST00000365371 303 ntBASIC4.7□□□□□ -1.66
HOXA3O43365 RNU6-877P-201ENST00000383868 107 ntBASIC4.7□□□□□ -1.66
HOXA3O43365 AC016769.3-201ENST00000396562 315 ntBASIC4.7□□□□□ -1.66
HOXA3O43365 AL031679.1-201ENST00000400616 525 ntBASIC4.7□□□□□ -1.66
HOXA3O43365 RPA3-203ENST00000401447 414 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXA3O43365 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HOXA3O43365 HMGB3P20-201ENST00000417997 600 ntBASIC4.7□□□□□ -1.66
HOXA3O43365 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXA3O43365 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.7□□□□□ -1.66
HOXA3O43365 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXA3O43365 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXA3O43365 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC4.7□□□□□ -1.66
HOXA3O43365 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXA3O43365 RPL31P35-201ENST00000431058 377 ntBASIC4.7□□□□□ -1.66
HOXA3O43365 MTCO2P11-201ENST00000431069 680 ntBASIC4.7□□□□□ -1.66
HOXA3O43365 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXA3O43365 AC023141.8-201ENST00000442554 208 ntBASIC4.7□□□□□ -1.66
HOXA3O43365 AC079922.1-201ENST00000443291 359 ntBASIC4.7□□□□□ -1.66
HOXA3O43365 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXA3O43365 AC002381.1-201ENST00000447049 280 ntBASIC4.7□□□□□ -1.66
HOXA3O43365 AC132479.1-201ENST00000449160 144 ntBASIC4.7□□□□□ -1.66
HOXA3O43365 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC4.7□□□□□ -1.66
HOXA3O43365 SDC4P-201ENST00000453285 601 ntBASIC4.7□□□□□ -1.66
HOXA3O43365 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXA3O43365 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC4.7□□□□□ -1.66
HOXA3O43365 ACA64.4-201ENST00000459070 127 ntBASIC4.7□□□□□ -1.66
HOXA3O43365 snoU13.29-201ENST00000459370 104 ntBASIC4.7□□□□□ -1.66
HOXA3O43365 RPL35P6-201ENST00000490024 372 ntBASIC4.7□□□□□ -1.66
HOXA3O43365 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC4.7□□□□□ -1.66
HOXA3O43365 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC4.7□□□□□ -1.66
HOXA3O43365 IGLV2-28-201ENST00000520681 304 ntBASIC4.7□□□□□ -1.66
HOXA3O43365 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXA3O43365 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXA3O43365 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXA3O43365 AL512310.1-201ENST00000548639 172 ntBASIC4.7□□□□□ -1.66
HOXA3O43365 AL049872.1-201ENST00000556323 322 ntBASIC4.7□□□□□ -1.66
HOXA3O43365 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC4.7□□□□□ -1.66
HOXA3O43365 NPM1P42-201ENST00000560329 862 ntBASIC4.7□□□□□ -1.66
HOXA3O43365 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms