Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC7.66□□□□□ -1.18
SHROOM4Q9ULL8 HSPD1P11-201ENST00000508643 1702 ntBASIC7.66□□□□□ -1.18
SHROOM4Q9ULL8 AC009229.4-201ENST00000623854 1947 ntBASIC7.66□□□□□ -1.18
SHROOM4Q9ULL8 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
SHROOM4Q9ULL8 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
SHROOM4Q9ULL8 RNU6-178P-201ENST00000384631 104 ntBASIC7.66□□□□□ -1.18
SHROOM4Q9ULL8 AC245052.5-201ENST00000416320 649 ntBASIC7.66□□□□□ -1.18
SHROOM4Q9ULL8 UBE2D3P3-201ENST00000426992 425 ntBASIC7.66□□□□□ -1.18
SHROOM4Q9ULL8 AL031663.1-201ENST00000437445 219 ntBASIC7.66□□□□□ -1.18
SHROOM4Q9ULL8 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC7.66□□□□□ -1.18
SHROOM4Q9ULL8 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC7.66□□□□□ -1.18
SHROOM4Q9ULL8 MAL2-205ENST00000521048 575 ntTSL 4 BASIC7.66□□□□□ -1.18
SHROOM4Q9ULL8 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC7.66□□□□□ -1.18
SHROOM4Q9ULL8 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC7.66□□□□□ -1.18
SHROOM4Q9ULL8 AC011374.2-201ENST00000607135 526 ntBASIC7.66□□□□□ -1.18
SHROOM4Q9ULL8 AC005344.1-201ENST00000613391 459 ntBASIC7.66□□□□□ -1.18
SHROOM4Q9ULL8 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC7.66□□□□□ -1.18
SHROOM4Q9ULL8 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC7.66□□□□□ -1.18
SHROOM4Q9ULL8 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC7.66□□□□□ -1.18
SHROOM4Q9ULL8 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC7.66□□□□□ -1.18
SHROOM4Q9ULL8 HIST1H2APS3-201ENST00000403259 134 ntBASIC7.65□□□□□ -1.18
SHROOM4Q9ULL8 AC013404.1-201ENST00000413068 249 ntBASIC7.65□□□□□ -1.18
SHROOM4Q9ULL8 VN1R42P-201ENST00000424651 344 ntBASIC7.65□□□□□ -1.18
SHROOM4Q9ULL8 ETF1P3-201ENST00000430422 1160 ntBASIC7.65□□□□□ -1.18
SHROOM4Q9ULL8 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC7.65□□□□□ -1.18
SHROOM4Q9ULL8 CBX1P4-201ENST00000439415 457 ntBASIC7.65□□□□□ -1.18
SHROOM4Q9ULL8 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC7.65□□□□□ -1.18
SHROOM4Q9ULL8 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
SHROOM4Q9ULL8 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC7.65□□□□□ -1.18
SHROOM4Q9ULL8 RPL23AP87-202ENST00000573039 466 ntBASIC7.65□□□□□ -1.18
SHROOM4Q9ULL8 MIR4513-201ENST00000581077 86 ntBASIC7.65□□□□□ -1.18
SHROOM4Q9ULL8 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC7.65□□□□□ -1.18
SHROOM4Q9ULL8 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
SHROOM4Q9ULL8 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC7.65□□□□□ -1.18
SHROOM4Q9ULL8 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
SHROOM4Q9ULL8 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC7.65□□□□□ -1.18
SHROOM4Q9ULL8 PCNP-208ENST00000627393 136 ntTSL 2 BASIC7.65□□□□□ -1.18
SHROOM4Q9ULL8 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC7.65□□□□□ -1.19
SHROOM4Q9ULL8 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC7.65□□□□□ -1.19
SHROOM4Q9ULL8 USP8P1-201ENST00000494673 3183 ntBASIC7.65□□□□□ -1.19
SHROOM4Q9ULL8 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC7.65□□□□□ -1.19
SHROOM4Q9ULL8 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC7.64□□□□□ -1.19
SHROOM4Q9ULL8 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC7.64□□□□□ -1.19
SHROOM4Q9ULL8 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC7.64□□□□□ -1.19
SHROOM4Q9ULL8 RNU4-27P-201ENST00000410889 139 ntBASIC7.64□□□□□ -1.19
SHROOM4Q9ULL8 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC7.64□□□□□ -1.19
SHROOM4Q9ULL8 AC023128.2-201ENST00000420880 1223 ntBASIC7.64□□□□□ -1.19
SHROOM4Q9ULL8 AC005189.1-201ENST00000431286 310 ntBASIC7.64□□□□□ -1.19
SHROOM4Q9ULL8 PRELID3BP10-201ENST00000431957 584 ntBASIC7.64□□□□□ -1.19
SHROOM4Q9ULL8 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
SHROOM4Q9ULL8 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC7.64□□□□□ -1.19
SHROOM4Q9ULL8 SETP6-201ENST00000479329 568 ntBASIC7.64□□□□□ -1.19
SHROOM4Q9ULL8 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC7.64□□□□□ -1.19
SHROOM4Q9ULL8 AC016550.1-201ENST00000505348 785 ntBASIC7.64□□□□□ -1.19
SHROOM4Q9ULL8 AC112518.2-201ENST00000508565 425 ntBASIC7.64□□□□□ -1.19
SHROOM4Q9ULL8 OR5AK3P-201ENST00000527486 1297 ntBASIC7.64□□□□□ -1.19
SHROOM4Q9ULL8 PHBP17-201ENST00000528576 541 ntBASIC7.64□□□□□ -1.19
SHROOM4Q9ULL8 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC7.64□□□□□ -1.19
SHROOM4Q9ULL8 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC7.64□□□□□ -1.19
SHROOM4Q9ULL8 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC7.64□□□□□ -1.19
SHROOM4Q9ULL8 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC7.64□□□□□ -1.19
SHROOM4Q9ULL8 AC015726.3-201ENST00000624501 418 ntBASIC7.64□□□□□ -1.19
SHROOM4Q9ULL8 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC7.64□□□□□ -1.19
SHROOM4Q9ULL8 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
SHROOM4Q9ULL8 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
SHROOM4Q9ULL8 AC008432.1-201ENST00000615912 1320 ntBASIC7.64□□□□□ -1.19
SHROOM4Q9ULL8 MAPK10-303ENST00000641324 3959 ntBASIC7.64□□□□□ -1.19
SHROOM4Q9ULL8 AL606495.1-201ENST00000422100 813 ntBASIC7.63□□□□□ -1.19
SHROOM4Q9ULL8 AC099336.2-201ENST00000422457 254 ntBASIC7.63□□□□□ -1.19
SHROOM4Q9ULL8 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC7.63□□□□□ -1.19
SHROOM4Q9ULL8 AL591623.2-201ENST00000449978 222 ntBASIC7.63□□□□□ -1.19
SHROOM4Q9ULL8 RPL7P55-201ENST00000450522 746 ntBASIC7.63□□□□□ -1.19
SHROOM4Q9ULL8 AC005229.2-201ENST00000456995 399 ntBASIC7.63□□□□□ -1.19
SHROOM4Q9ULL8 AC099560.2-201ENST00000457554 255 ntBASIC7.63□□□□□ -1.19
SHROOM4Q9ULL8 TPT1P1-201ENST00000458495 518 ntBASIC7.63□□□□□ -1.19
SHROOM4Q9ULL8 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC7.63□□□□□ -1.19
SHROOM4Q9ULL8 RNU1-103P-201ENST00000516502 125 ntBASIC7.63□□□□□ -1.19
SHROOM4Q9ULL8 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC7.63□□□□□ -1.19
SHROOM4Q9ULL8 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC7.63□□□□□ -1.19
SHROOM4Q9ULL8 AC090312.1-201ENST00000580637 348 ntBASIC7.63□□□□□ -1.19
SHROOM4Q9ULL8 AC010200.2-201ENST00000605098 235 ntBASIC7.63□□□□□ -1.19
SHROOM4Q9ULL8 AC090246.1-201ENST00000616499 426 ntBASIC7.63□□□□□ -1.19
SHROOM4Q9ULL8 AC073530.2-201ENST00000623987 261 ntBASIC7.63□□□□□ -1.19
SHROOM4Q9ULL8 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
SHROOM4Q9ULL8 AC074029.4-201ENST00000624796 1859 ntBASIC7.63□□□□□ -1.19
SHROOM4Q9ULL8 MTND4P31-201ENST00000425607 1343 ntBASIC7.63□□□□□ -1.19
SHROOM4Q9ULL8 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC7.63□□□□□ -1.19
SHROOM4Q9ULL8 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 GSTM3P2-201ENST00000412746 530 ntBASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 PNRC2P1-201ENST00000423940 420 ntBASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 SEC63P1-201ENST00000425785 1258 ntBASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 PPIAP3-201ENST00000450588 505 ntBASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 AC005912.1-201ENST00000495392 255 ntBASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC7.62□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms