Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC091516.1-201ENST00000549191 703 ntBASIC4.05□□□□□ -1.76
LHX3Q9UBR4 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC4.05□□□□□ -1.76
LHX3Q9UBR4 GLRXP2-201ENST00000555594 321 ntBASIC4.05□□□□□ -1.76
LHX3Q9UBR4 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC4.05□□□□□ -1.76
LHX3Q9UBR4 VN1R85P-201ENST00000601587 426 ntBASIC4.05□□□□□ -1.76
LHX3Q9UBR4 AC005776.1-201ENST00000603164 290 ntBASIC4.05□□□□□ -1.76
LHX3Q9UBR4 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC4.05□□□□□ -1.76
LHX3Q9UBR4 AC017076.1-201ENST00000607613 578 ntBASIC4.05□□□□□ -1.76
LHX3Q9UBR4 AC245100.7-201ENST00000609678 442 ntBASIC4.05□□□□□ -1.76
LHX3Q9UBR4 MIR6875-201ENST00000617506 72 ntBASIC4.05□□□□□ -1.76
LHX3Q9UBR4 FRG1HP-204ENST00000617940 757 ntBASIC4.05□□□□□ -1.76
LHX3Q9UBR4 AC073569.3-201ENST00000619055 682 ntBASIC4.05□□□□□ -1.76
LHX3Q9UBR4 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.05□□□□□ -1.76
LHX3Q9UBR4 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
LHX3Q9UBR4 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.05□□□□□ -1.76
LHX3Q9UBR4 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
LHX3Q9UBR4 SEC63P2-201ENST00000503863 1939 ntBASIC4.05□□□□□ -1.76
LHX3Q9UBR4 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC4.04□□□□□ -1.76
LHX3Q9UBR4 AL049737.1-201ENST00000413920 1403 ntBASIC4.04□□□□□ -1.76
LHX3Q9UBR4 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
LHX3Q9UBR4 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
LHX3Q9UBR4 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
LHX3Q9UBR4 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
LHX3Q9UBR4 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
LHX3Q9UBR4 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
LHX3Q9UBR4 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
LHX3Q9UBR4 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
LHX3Q9UBR4 SNORD56.4-201ENST00000363883 71 ntBASIC4.04□□□□□ -1.76
LHX3Q9UBR4 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
LHX3Q9UBR4 MIR513A2-201ENST00000385249 127 ntBASIC4.04□□□□□ -1.76
LHX3Q9UBR4 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
LHX3Q9UBR4 RNU6-628P-201ENST00000410675 107 ntBASIC4.04□□□□□ -1.76
LHX3Q9UBR4 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC4.04□□□□□ -1.76
LHX3Q9UBR4 OR8F1P-201ENST00000425243 930 ntBASIC4.04□□□□□ -1.76
LHX3Q9UBR4 ZNF736P6Y-201ENST00000447526 1213 ntBASIC4.04□□□□□ -1.76
LHX3Q9UBR4 RPS6P2-201ENST00000454208 705 ntBASIC4.04□□□□□ -1.76
LHX3Q9UBR4 SETP6-201ENST00000479329 568 ntBASIC4.04□□□□□ -1.76
LHX3Q9UBR4 RPL21P47-201ENST00000483696 477 ntBASIC4.04□□□□□ -1.76
LHX3Q9UBR4 RPL30P11-201ENST00000495304 339 ntBASIC4.04□□□□□ -1.76
LHX3Q9UBR4 MTCO2P9-201ENST00000503214 694 ntBASIC4.04□□□□□ -1.76
LHX3Q9UBR4 AC008565.1-201ENST00000509046 885 ntBASIC4.04□□□□□ -1.76
LHX3Q9UBR4 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC4.04□□□□□ -1.76
LHX3Q9UBR4 AC083923.1-201ENST00000523708 376 ntBASIC4.04□□□□□ -1.76
LHX3Q9UBR4 AC113192.3-201ENST00000529152 742 ntBASIC4.04□□□□□ -1.76
LHX3Q9UBR4 OR4R2P-201ENST00000530815 597 ntBASIC4.04□□□□□ -1.76
LHX3Q9UBR4 AC022882.1-201ENST00000532142 501 ntBASIC4.04□□□□□ -1.76
LHX3Q9UBR4 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
LHX3Q9UBR4 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC4.04□□□□□ -1.76
LHX3Q9UBR4 AC069240.1-201ENST00000548774 375 ntBASIC4.04□□□□□ -1.76
LHX3Q9UBR4 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC4.04□□□□□ -1.76
LHX3Q9UBR4 HNRNPCP4-201ENST00000571636 900 ntBASIC4.04□□□□□ -1.76
LHX3Q9UBR4 RN7SL703P-201ENST00000578485 302 ntBASIC4.04□□□□□ -1.76
LHX3Q9UBR4 AC005972.3-201ENST00000606304 481 ntBASIC4.04□□□□□ -1.76
LHX3Q9UBR4 AC012603.1-201ENST00000606424 528 ntBASIC4.04□□□□□ -1.76
LHX3Q9UBR4 AC084824.5-201ENST00000612009 413 ntBASIC4.04□□□□□ -1.76
LHX3Q9UBR4 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.04□□□□□ -1.76
LHX3Q9UBR4 AC132825.7-201ENST00000638744 335 ntBASIC4.04□□□□□ -1.76
LHX3Q9UBR4 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
LHX3Q9UBR4 AC091046.3-201ENST00000631455 1574 ntBASIC4.04□□□□□ -1.76
LHX3Q9UBR4 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
LHX3Q9UBR4 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
LHX3Q9UBR4 AL592437.2-201ENST00000421655 2434 ntBASIC4.04□□□□□ -1.76
LHX3Q9UBR4 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
LHX3Q9UBR4 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC4.04□□□□□ -1.76
LHX3Q9UBR4 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.04□□□□□ -1.76
LHX3Q9UBR4 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
LHX3Q9UBR4 MTCO1P4-201ENST00000520516 1409 ntBASIC4.04□□□□□ -1.76
LHX3Q9UBR4 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.04□□□□□ -1.76
LHX3Q9UBR4 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 ENSAP3-201ENST00000312710 333 ntBASIC4.03□□□□□ -1.76
LHX3Q9UBR4 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 SNORA40.4-201ENST00000390971 128 ntBASIC4.03□□□□□ -1.76
LHX3Q9UBR4 AC092745.2-202ENST00000411880 369 ntBASIC4.03□□□□□ -1.76
LHX3Q9UBR4 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 UBE2D3P3-201ENST00000426992 425 ntBASIC4.03□□□□□ -1.76
LHX3Q9UBR4 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 MOB1AP2-201ENST00000446060 614 ntBASIC4.03□□□□□ -1.76
LHX3Q9UBR4 EIF2S2P5-201ENST00000457635 968 ntBASIC4.03□□□□□ -1.76
LHX3Q9UBR4 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 VN1R105P-201ENST00000486595 910 ntBASIC4.03□□□□□ -1.76
LHX3Q9UBR4 RN7SL271P-201ENST00000487601 295 ntBASIC4.03□□□□□ -1.76
LHX3Q9UBR4 FTH1P24-201ENST00000503502 462 ntBASIC4.03□□□□□ -1.76
LHX3Q9UBR4 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 RN7SKP283-201ENST00000517197 270 ntBASIC4.03□□□□□ -1.76
LHX3Q9UBR4 RNA5SP179-201ENST00000517284 121 ntBASIC4.03□□□□□ -1.76
LHX3Q9UBR4 HMGB1P23-201ENST00000518743 568 ntBASIC4.03□□□□□ -1.76
LHX3Q9UBR4 MTND2P7-201ENST00000521337 640 ntBASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms