Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 HSPA8P17-201ENST00000427029 1382 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
USP39Q53GS9 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
USP39Q53GS9 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
USP39Q53GS9 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
USP39Q53GS9 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
USP39Q53GS9 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
USP39Q53GS9 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
USP39Q53GS9 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.3□□□□□ -1.56
USP39Q53GS9 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
USP39Q53GS9 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.3□□□□□ -1.56
USP39Q53GS9 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
USP39Q53GS9 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
USP39Q53GS9 RNA5SP27-201ENST00000363839 119 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 Y_RNA.256-201ENST00000364594 104 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 RNU6-707P-201ENST00000364647 95 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 XGY1-201ENST00000381172 446 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 RPL10P10-201ENST00000403509 664 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 RPS4XP9-201ENST00000405151 780 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
USP39Q53GS9 RPL21P108-201ENST00000413857 481 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 MRPS36P1-201ENST00000421291 307 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 TRIM60P10Y-201ENST00000425589 751 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.3□□□□□ -1.56
USP39Q53GS9 CNOT7P1-201ENST00000429006 852 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC5.3□□□□□ -1.56
USP39Q53GS9 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.3□□□□□ -1.56
USP39Q53GS9 MTCO2P11-201ENST00000431069 680 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 TRIM60P3Y-201ENST00000432201 673 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 USP12PX-201ENST00000432383 1057 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.3□□□□□ -1.56
USP39Q53GS9 TRIM60P8Y-201ENST00000436338 762 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 PRPF38AP2-201ENST00000438179 851 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC5.3□□□□□ -1.56
USP39Q53GS9 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.3□□□□□ -1.56
USP39Q53GS9 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC5.3□□□□□ -1.56
USP39Q53GS9 AC104634.1-201ENST00000452720 462 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 SSXP1-201ENST00000453640 473 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 AL133244.1-201ENST00000456007 258 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC5.3□□□□□ -1.56
USP39Q53GS9 RPL5P13-201ENST00000462840 709 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.3□□□□□ -1.56
USP39Q53GS9 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC5.3□□□□□ -1.56
USP39Q53GS9 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC5.3□□□□□ -1.56
USP39Q53GS9 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC5.3□□□□□ -1.56
USP39Q53GS9 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC5.3□□□□□ -1.56
USP39Q53GS9 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC5.3□□□□□ -1.56
USP39Q53GS9 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
USP39Q53GS9 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.3□□□□□ -1.56
USP39Q53GS9 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC5.3□□□□□ -1.56
USP39Q53GS9 AC079075.1-201ENST00000559543 878 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC5.3□□□□□ -1.56
USP39Q53GS9 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC5.3□□□□□ -1.56
USP39Q53GS9 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.3□□□□□ -1.56
USP39Q53GS9 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC5.3□□□□□ -1.56
USP39Q53GS9 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
USP39Q53GS9 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC5.3□□□□□ -1.56
USP39Q53GS9 AC127024.5-201ENST00000580085 462 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 RN7SL356P-201ENST00000582228 248 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC5.3□□□□□ -1.56
USP39Q53GS9 AC078795.3-201ENST00000602913 472 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 AP000907.4-201ENST00000604143 237 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 AC009994.1-201ENST00000606889 253 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 AL022394.1-201ENST00000606979 292 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 AC063943.3-201ENST00000615562 356 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.3□□□□□ -1.56
USP39Q53GS9 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
USP39Q53GS9 AC006338.1-201ENST00000618453 749 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 AL731566.2-201ENST00000618971 317 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.3□□□□□ -1.56
USP39Q53GS9 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
USP39Q53GS9 AF001550.2-201ENST00000636643 217 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 AC135068.12-201ENST00000637370 931 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 AC073869.8-201ENST00000641806 335 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
USP39Q53GS9 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
USP39Q53GS9 AC005539.1-201ENST00000443768 1479 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
USP39Q53GS9 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
USP39Q53GS9 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
USP39Q53GS9 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
USP39Q53GS9 AC092747.4-201ENST00000620519 1861 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 AL354685.2-201ENST00000448218 1447 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.3□□□□□ -1.56
USP39Q53GS9 AC100757.1-201ENST00000616872 1835 ntBASIC5.3□□□□□ -1.56
USP39Q53GS9 EEF1A1P36-201ENST00000427807 1351 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 MTND4P16-201ENST00000466108 1367 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 MAPK10-263ENST00000641052 4307 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
USP39Q53GS9 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.29□□□□□ -1.56
USP39Q53GS9 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
USP39Q53GS9 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.29□□□□□ -1.56
USP39Q53GS9 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC5.29□□□□□ -1.56
USP39Q53GS9 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
USP39Q53GS9 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
USP39Q53GS9 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.29□□□□□ -1.56
USP39Q53GS9 MAPK6PS2-201ENST00000379571 2060 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
USP39Q53GS9 AC008033.1-201ENST00000216407 1162 ntBASIC5.29□□□□□ -1.56
USP39Q53GS9 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 136.1 ms