Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC4.42□□□□□ -1.7
CCDC88AQ3V6T2 RNA5SP341-201ENST00000516261 117 ntBASIC4.42□□□□□ -1.7
CCDC88AQ3V6T2 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC88AQ3V6T2 EIF4BP1-201ENST00000554881 351 ntBASIC4.42□□□□□ -1.7
CCDC88AQ3V6T2 AC090877.1-201ENST00000561418 344 ntBASIC4.42□□□□□ -1.7
CCDC88AQ3V6T2 DPRXP4-201ENST00000578053 568 ntBASIC4.42□□□□□ -1.7
CCDC88AQ3V6T2 CKS1BP3-201ENST00000600888 237 ntBASIC4.42□□□□□ -1.7
CCDC88AQ3V6T2 AC068790.5-201ENST00000602741 355 ntBASIC4.42□□□□□ -1.7
CCDC88AQ3V6T2 MRPS35P3-201ENST00000603189 709 ntBASIC4.42□□□□□ -1.7
CCDC88AQ3V6T2 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.42□□□□□ -1.7
CCDC88AQ3V6T2 AC099654.11-201ENST00000638857 294 ntBASIC4.42□□□□□ -1.7
CCDC88AQ3V6T2 AC005332.5-201ENST00000591222 2919 ntBASIC4.42□□□□□ -1.7
CCDC88AQ3V6T2 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC88AQ3V6T2 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC88AQ3V6T2 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 RNA5SP424-201ENST00000390988 115 ntBASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 UBE2V1P2-201ENST00000397758 440 ntBASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 RPF2P1-201ENST00000424137 906 ntBASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 AC010655.1-201ENST00000449336 292 ntBASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 MIR5004-201ENST00000579078 107 ntBASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 AC006504.3-201ENST00000586818 523 ntBASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 AL606834.2-201ENST00000602954 668 ntBASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 YPEL5P2-201ENST00000605553 359 ntBASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 SNORA38.1-201ENST00000364172 131 ntBASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 HCG17-214ENST00000453558 732 ntTSL 5 BASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 SNORD105B-201ENST00000458770 79 ntBASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 MIR4727-201ENST00000622232 55 ntBASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 AL359715.5-201ENST00000623431 443 ntBASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC88AQ3V6T2 MTND5P12-201ENST00000502851 1449 ntBASIC4.4□□□□□ -1.7
CCDC88AQ3V6T2 AL132656.3-201ENST00000606384 1595 ntBASIC4.4□□□□□ -1.7
CCDC88AQ3V6T2 AC116158.1-201ENST00000560231 2129 ntBASIC4.4□□□□□ -1.7
CCDC88AQ3V6T2 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.4□□□□□ -1.71
CCDC88AQ3V6T2 RNA5SP39-201ENST00000411245 120 ntBASIC4.4□□□□□ -1.71
CCDC88AQ3V6T2 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.4□□□□□ -1.71
CCDC88AQ3V6T2 USP9YP36-201ENST00000424581 829 ntBASIC4.4□□□□□ -1.71
CCDC88AQ3V6T2 AC008065.1-201ENST00000428525 348 ntBASIC4.4□□□□□ -1.71
CCDC88AQ3V6T2 USP9YP31-201ENST00000431405 881 ntBASIC4.4□□□□□ -1.71
CCDC88AQ3V6T2 AC092809.1-201ENST00000441469 474 ntBASIC4.4□□□□□ -1.71
CCDC88AQ3V6T2 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC88AQ3V6T2 AC080014.1-201ENST00000496877 1201 ntBASIC4.4□□□□□ -1.71
CCDC88AQ3V6T2 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.4□□□□□ -1.71
CCDC88AQ3V6T2 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC88AQ3V6T2 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
CCDC88AQ3V6T2 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
CCDC88AQ3V6T2 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC88AQ3V6T2 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC88AQ3V6T2 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.4□□□□□ -1.71
CCDC88AQ3V6T2 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.4□□□□□ -1.71
CCDC88AQ3V6T2 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 TAF9BP1-201ENST00000396646 746 ntBASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 AL357075.1-201ENST00000404107 726 ntBASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 AC006480.1-201ENST00000449887 378 ntBASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 AC023141.12-201ENST00000512399 199 ntBASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 SULT1C2P2-201ENST00000562517 294 ntBASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 EIF1P6-201ENST00000600054 334 ntBASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 PROS2P-201ENST00000474651 1951 ntBASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 AL022311.1-201ENST00000623726 19416 ntBASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 HLFP1-201ENST00000402375 499 ntBASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 USP12PY-201ENST00000427677 1064 ntBASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 AC107294.1-201ENST00000609524 467 ntBASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 MIR486-1-201ENST00000612171 68 ntBASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 AC069209.1-201ENST00000619282 651 ntBASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC88AQ3V6T2 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC88AQ3V6T2 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC88AQ3V6T2 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.38□□□□□ -1.71
CCDC88AQ3V6T2 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC88AQ3V6T2 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms