Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC2.76□□□□□ -1.97
FOXA3P55318 IGHV3-76-201ENST00000522465 295 ntBASIC2.76□□□□□ -1.97
FOXA3P55318 AP006245.1-201ENST00000522549 120 ntBASIC2.76□□□□□ -1.97
FOXA3P55318 PSMB7P1-201ENST00000556349 514 ntBASIC2.76□□□□□ -1.97
FOXA3P55318 SNORA62.6-201ENST00000606322 83 ntBASIC2.76□□□□□ -1.97
FOXA3P55318 AL354760.1-201ENST00000608357 643 ntBASIC2.76□□□□□ -1.97
FOXA3P55318 AC211433.2-201ENST00000608433 387 ntBASIC2.76□□□□□ -1.97
FOXA3P55318 MIR8059-201ENST00000620427 81 ntBASIC2.76□□□□□ -1.97
FOXA3P55318 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC2.76□□□□□ -1.97
FOXA3P55318 AL513302.2-201ENST00000562313 1842 ntBASIC2.76□□□□□ -1.97
FOXA3P55318 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
FOXA3P55318 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC2.76□□□□□ -1.97
FOXA3P55318 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
FOXA3P55318 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC2.75□□□□□ -1.97
FOXA3P55318 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC2.75□□□□□ -1.97
FOXA3P55318 LARP1BP1-201ENST00000506036 1359 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
FOXA3P55318 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC2.75□□□□□ -1.97
FOXA3P55318 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC2.75□□□□□ -1.97
FOXA3P55318 ZNF542P-204ENST00000482727 1305 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 AC068647.1-201ENST00000489539 2265 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC2.75□□□□□ -1.97
FOXA3P55318 RNU6-697P-201ENST00000363348 107 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 RNA5SP505-201ENST00000364748 108 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC2.75□□□□□ -1.97
FOXA3P55318 RFX3-203ENST00000381984 364 ntTSL 3 BASIC2.75□□□□□ -1.97
FOXA3P55318 MIR550A3-201ENST00000390735 95 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 ENSAP1-201ENST00000392855 326 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 AL035419.1-201ENST00000397037 564 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 RPS16P5-201ENST00000406501 404 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC2.75□□□□□ -1.97
FOXA3P55318 RNA5SP293-201ENST00000410527 113 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 RN7SKP222-201ENST00000410651 315 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 RN7SKP33-201ENST00000410942 340 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC2.75□□□□□ -1.97
FOXA3P55318 RPS7P13-201ENST00000413955 498 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC2.75□□□□□ -1.97
FOXA3P55318 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC2.75□□□□□ -1.97
FOXA3P55318 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC2.75□□□□□ -1.97
FOXA3P55318 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC2.75□□□□□ -1.97
FOXA3P55318 BX679664.1-201ENST00000434429 253 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 Z74696.2-201ENST00000436514 498 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 ACTR3P2-201ENST00000439585 1257 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
FOXA3P55318 RPS3AP46-201ENST00000448352 682 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC2.75□□□□□ -1.97
FOXA3P55318 AC013356.1-201ENST00000489027 564 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 RPS27AP13-201ENST00000498403 237 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 NDUFA5P12-201ENST00000503796 343 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC2.75□□□□□ -1.97
FOXA3P55318 TXNP6-201ENST00000510190 310 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC2.75□□□□□ -1.97
FOXA3P55318 RNU6-579P-201ENST00000516879 102 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 RN7SKP289-201ENST00000517244 295 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC2.75□□□□□ -1.97
FOXA3P55318 LECT2-205ENST00000522943 574 ntTSL 3 BASIC2.75□□□□□ -1.97
FOXA3P55318 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC2.75□□□□□ -1.97
FOXA3P55318 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
FOXA3P55318 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC2.75□□□□□ -1.97
FOXA3P55318 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
FOXA3P55318 IGKV2OR2-8-201ENST00000558710 300 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 NPM1P47-201ENST00000560843 856 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 AL845331.3-202ENST00000562856 261 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 MIR4715-201ENST00000584117 79 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC2.75□□□□□ -1.97
FOXA3P55318 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC2.75□□□□□ -1.97
FOXA3P55318 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
FOXA3P55318 BNIP3P38-201ENST00000601117 544 ntBASIC2.75□□□□□ -1.97
FOXA3P55318 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
FOXA3P55318 TEX41-238ENST00000604253 709 ntTSL 5 BASIC2.75□□□□□ -1.97
FOXA3P55318 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
FOXA3P55318 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC2.75□□□□□ -1.97
FOXA3P55318 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
FOXA3P55318 WDR75-207ENST00000631047 270 ntTSL 5 BASIC2.75□□□□□ -1.97
FOXA3P55318 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC2.75□□□□□ -1.97
FOXA3P55318 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
FOXA3P55318 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
FOXA3P55318 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
FOXA3P55318 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
FOXA3P55318 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC2.75□□□□□ -1.97
FOXA3P55318 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
FOXA3P55318 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC2.75□□□□□ -1.97
FOXA3P55318 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC2.74□□□□□ -1.97
FOXA3P55318 RAD1P1-201ENST00000231383 813 ntBASIC2.74□□□□□ -1.97
FOXA3P55318 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
FOXA3P55318 MIR30E-201ENST00000362104 92 ntBASIC2.74□□□□□ -1.97
FOXA3P55318 SNORA73.2-201ENST00000364946 201 ntBASIC2.74□□□□□ -1.97
FOXA3P55318 MIR591-201ENST00000385290 95 ntBASIC2.74□□□□□ -1.97
FOXA3P55318 RN7SKP278-201ENST00000410504 342 ntBASIC2.74□□□□□ -1.97
FOXA3P55318 HMGB3P20-201ENST00000417997 600 ntBASIC2.74□□□□□ -1.97
FOXA3P55318 CNOT7P1-201ENST00000429006 852 ntBASIC2.74□□□□□ -1.97
FOXA3P55318 MRPS18BP2-201ENST00000434310 759 ntBASIC2.74□□□□□ -1.97
FOXA3P55318 AC093716.1-201ENST00000435923 377 ntBASIC2.74□□□□□ -1.97
FOXA3P55318 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC2.74□□□□□ -1.97
FOXA3P55318 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
FOXA3P55318 CBX1P1-201ENST00000440184 427 ntBASIC2.74□□□□□ -1.97
FOXA3P55318 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC2.74□□□□□ -1.97
FOXA3P55318 RPS20P32-201ENST00000456044 356 ntBASIC2.74□□□□□ -1.97
FOXA3P55318 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC2.74□□□□□ -1.97
FOXA3P55318 snoU13.1-201ENST00000459157 104 ntBASIC2.74□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms