Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.44□□□□□ -1.86
FOXA1P55317 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
FOXA1P55317 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
FOXA1P55317 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
FOXA1P55317 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC3.43□□□□□ -1.86
FOXA1P55317 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
FOXA1P55317 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
FOXA1P55317 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
FOXA1P55317 AC007685.1-201ENST00000329806 452 ntBASIC3.43□□□□□ -1.86
FOXA1P55317 RNA5SP51-201ENST00000364750 119 ntBASIC3.43□□□□□ -1.86
FOXA1P55317 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
FOXA1P55317 AC007066.1-201ENST00000392902 381 ntBASIC3.43□□□□□ -1.86
FOXA1P55317 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
FOXA1P55317 TCEA1P4-201ENST00000415066 844 ntBASIC3.43□□□□□ -1.86
FOXA1P55317 RPL17P36-201ENST00000420302 549 ntBASIC3.43□□□□□ -1.86
FOXA1P55317 MRPS18BP2-201ENST00000434310 759 ntBASIC3.43□□□□□ -1.86
FOXA1P55317 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC3.43□□□□□ -1.86
FOXA1P55317 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.43□□□□□ -1.86
FOXA1P55317 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC3.43□□□□□ -1.86
FOXA1P55317 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
FOXA1P55317 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC3.43□□□□□ -1.86
FOXA1P55317 AC007967.1-201ENST00000455422 1159 ntBASIC3.43□□□□□ -1.86
FOXA1P55317 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
FOXA1P55317 FTH1P24-201ENST00000503502 462 ntBASIC3.43□□□□□ -1.86
FOXA1P55317 AC110768.1-201ENST00000509222 400 ntBASIC3.43□□□□□ -1.86
FOXA1P55317 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.43□□□□□ -1.86
FOXA1P55317 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
FOXA1P55317 MIR2116-201ENST00000517221 80 ntBASIC3.43□□□□□ -1.86
FOXA1P55317 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC3.43□□□□□ -1.86
FOXA1P55317 AC018442.3-201ENST00000523025 183 ntBASIC3.43□□□□□ -1.86
FOXA1P55317 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC3.43□□□□□ -1.86
FOXA1P55317 AC109635.6-201ENST00000525487 1113 ntBASIC3.43□□□□□ -1.86
FOXA1P55317 DEFB109D-201ENST00000529497 240 ntBASIC3.43□□□□□ -1.86
FOXA1P55317 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
FOXA1P55317 AL121839.1-201ENST00000556233 1185 ntBASIC3.43□□□□□ -1.86
FOXA1P55317 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC3.43□□□□□ -1.86
FOXA1P55317 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC3.43□□□□□ -1.86
FOXA1P55317 MIR3160-1-201ENST00000577972 85 ntBASIC3.43□□□□□ -1.86
FOXA1P55317 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC3.43□□□□□ -1.86
FOXA1P55317 AC010615.3-201ENST00000597319 394 ntBASIC3.43□□□□□ -1.86
FOXA1P55317 AC067959.1-201ENST00000604334 379 ntBASIC3.43□□□□□ -1.86
FOXA1P55317 AL592295.2-201ENST00000612578 206 ntBASIC3.43□□□□□ -1.86
FOXA1P55317 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC3.43□□□□□ -1.86
FOXA1P55317 OTUD4P1-201ENST00000237841 3067 ntBASIC3.43□□□□□ -1.86
FOXA1P55317 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.43□□□□□ -1.86
FOXA1P55317 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
FOXA1P55317 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.43□□□□□ -1.86
FOXA1P55317 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
FOXA1P55317 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
FOXA1P55317 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.42□□□□□ -1.86
FOXA1P55317 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.42□□□□□ -1.86
FOXA1P55317 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
FOXA1P55317 NCSTNP1-201ENST00000406229 144 ntBASIC3.42□□□□□ -1.86
FOXA1P55317 SNX10-203ENST00000409367 746 ntTSL 5 BASIC3.42□□□□□ -1.86
FOXA1P55317 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
FOXA1P55317 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC3.42□□□□□ -1.86
FOXA1P55317 MTCYBP14-201ENST00000457471 715 ntBASIC3.42□□□□□ -1.86
FOXA1P55317 RN7SL594P-201ENST00000470590 287 ntBASIC3.42□□□□□ -1.86
FOXA1P55317 AP000563.1-201ENST00000490865 758 ntBASIC3.42□□□□□ -1.86
FOXA1P55317 AL133372.1-201ENST00000493565 745 ntBASIC3.42□□□□□ -1.86
FOXA1P55317 SETP14-201ENST00000497538 873 ntBASIC3.42□□□□□ -1.86
FOXA1P55317 AC020893.1-201ENST00000502452 580 ntBASIC3.42□□□□□ -1.86
FOXA1P55317 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
FOXA1P55317 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.42□□□□□ -1.86
FOXA1P55317 RNU2-27P-201ENST00000516185 142 ntBASIC3.42□□□□□ -1.86
FOXA1P55317 SNORD116-30-201ENST00000516468 85 ntBASIC3.42□□□□□ -1.86
FOXA1P55317 MIR2276-201ENST00000516886 89 ntBASIC3.42□□□□□ -1.86
FOXA1P55317 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC3.42□□□□□ -1.86
FOXA1P55317 AL139174.1-201ENST00000531489 886 ntBASIC3.42□□□□□ -1.86
FOXA1P55317 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.42□□□□□ -1.86
FOXA1P55317 AC011602.1-201ENST00000546484 331 ntBASIC3.42□□□□□ -1.86
FOXA1P55317 MIR5685-201ENST00000579080 79 ntBASIC3.42□□□□□ -1.86
FOXA1P55317 SNORD39.2-201ENST00000579995 76 ntBASIC3.42□□□□□ -1.86
FOXA1P55317 AP005212.4-201ENST00000614206 710 ntBASIC3.42□□□□□ -1.86
FOXA1P55317 AC008121.2-201ENST00000614647 523 ntBASIC3.42□□□□□ -1.86
FOXA1P55317 AC112200.1-201ENST00000625015 234 ntBASIC3.42□□□□□ -1.86
FOXA1P55317 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC3.42□□□□□ -1.86
FOXA1P55317 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.42□□□□□ -1.86
FOXA1P55317 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.42□□□□□ -1.86
FOXA1P55317 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
FOXA1P55317 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
FOXA1P55317 CYP1D1P-201ENST00000416662 1433 ntBASIC3.42□□□□□ -1.86
FOXA1P55317 AC107021.2-201ENST00000567714 2095 ntBASIC3.42□□□□□ -1.86
FOXA1P55317 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
FOXA1P55317 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
FOXA1P55317 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.41□□□□□ -1.86
FOXA1P55317 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.41□□□□□ -1.86
FOXA1P55317 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
FOXA1P55317 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
FOXA1P55317 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
FOXA1P55317 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
FOXA1P55317 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
FOXA1P55317 FRG1CP-201ENST00000358464 769 ntBASIC3.41□□□□□ -1.86
FOXA1P55317 RN7SKP44-201ENST00000363602 316 ntBASIC3.41□□□□□ -1.86
FOXA1P55317 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.41□□□□□ -1.86
FOXA1P55317 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
FOXA1P55317 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC3.41□□□□□ -1.86
FOXA1P55317 MTCO1P51-201ENST00000427672 1060 ntBASIC3.41□□□□□ -1.86
FOXA1P55317 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC3.41□□□□□ -1.86
FOXA1P55317 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms