Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RNU6-1339P-201ENST00000363574 91 ntBASIC4.01□□□□□ -1.77
SOX3P41225 RNU6-549P-201ENST00000384433 107 ntBASIC4.01□□□□□ -1.77
SOX3P41225 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
SOX3P41225 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
SOX3P41225 MCTS2P-201ENST00000394552 546 ntBASIC4.01□□□□□ -1.77
SOX3P41225 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
SOX3P41225 AL583835.1-201ENST00000399570 407 ntBASIC4.01□□□□□ -1.77
SOX3P41225 AC097374.1-203ENST00000400783 485 ntBASIC4.01□□□□□ -1.77
SOX3P41225 RNA5SP39-201ENST00000411245 120 ntBASIC4.01□□□□□ -1.77
SOX3P41225 RPL23AP26-201ENST00000412728 464 ntBASIC4.01□□□□□ -1.77
SOX3P41225 NRBF2P2-201ENST00000413087 861 ntBASIC4.01□□□□□ -1.77
SOX3P41225 RPS23P10-201ENST00000416185 486 ntBASIC4.01□□□□□ -1.77
SOX3P41225 AC092634.2-201ENST00000428146 1010 ntBASIC4.01□□□□□ -1.77
SOX3P41225 NANOGP6-201ENST00000429190 847 ntBASIC4.01□□□□□ -1.77
SOX3P41225 Z80107.1-201ENST00000436830 412 ntBASIC4.01□□□□□ -1.77
SOX3P41225 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC4.01□□□□□ -1.77
SOX3P41225 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC4.01□□□□□ -1.77
SOX3P41225 AC009263.1-201ENST00000441193 1239 ntBASIC4.01□□□□□ -1.77
SOX3P41225 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC4.01□□□□□ -1.77
SOX3P41225 RPL35AP15-201ENST00000468042 339 ntBASIC4.01□□□□□ -1.77
SOX3P41225 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC4.01□□□□□ -1.77
SOX3P41225 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.01□□□□□ -1.77
SOX3P41225 PRELID3BP5-201ENST00000508612 460 ntBASIC4.01□□□□□ -1.77
SOX3P41225 AC010285.3-201ENST00000511668 676 ntBASIC4.01□□□□□ -1.77
SOX3P41225 AC108043.1-201ENST00000512696 574 ntBASIC4.01□□□□□ -1.77
SOX3P41225 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC4.01□□□□□ -1.77
SOX3P41225 AC104417.1-201ENST00000523974 751 ntBASIC4.01□□□□□ -1.77
SOX3P41225 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.01□□□□□ -1.77
SOX3P41225 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC4.01□□□□□ -1.77
SOX3P41225 AC023824.3-201ENST00000569003 562 ntBASIC4.01□□□□□ -1.77
SOX3P41225 AC011477.5-201ENST00000586571 259 ntBASIC4.01□□□□□ -1.77
SOX3P41225 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.01□□□□□ -1.77
SOX3P41225 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.01□□□□□ -1.77
SOX3P41225 AC010200.2-201ENST00000605098 235 ntBASIC4.01□□□□□ -1.77
SOX3P41225 AC243654.2-201ENST00000612843 443 ntBASIC4.01□□□□□ -1.77
SOX3P41225 MIR6716-201ENST00000613413 80 ntBASIC4.01□□□□□ -1.77
SOX3P41225 AC131238.1-201ENST00000617135 328 ntBASIC4.01□□□□□ -1.77
SOX3P41225 LINC00901.1-201ENST00000617252 152 ntBASIC4.01□□□□□ -1.77
SOX3P41225 AC104985.3-201ENST00000623479 597 ntBASIC4.01□□□□□ -1.77
SOX3P41225 FP325313.1-201ENST00000638228 703 ntBASIC4.01□□□□□ -1.77
SOX3P41225 AL158163.1-201ENST00000603915 1649 ntBASIC4.01□□□□□ -1.77
SOX3P41225 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.01□□□□□ -1.77
SOX3P41225 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
SOX3P41225 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
SOX3P41225 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
SOX3P41225 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
SOX3P41225 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.01□□□□□ -1.77
SOX3P41225 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
SOX3P41225 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
SOX3P41225 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4□□□□□ -1.77
SOX3P41225 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4□□□□□ -1.77
SOX3P41225 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4□□□□□ -1.77
SOX3P41225 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
SOX3P41225 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC4□□□□□ -1.77
SOX3P41225 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
SOX3P41225 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
SOX3P41225 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4□□□□□ -1.77
SOX3P41225 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4□□□□□ -1.77
SOX3P41225 RNU6-353P-201ENST00000364266 108 ntBASIC4□□□□□ -1.77
SOX3P41225 RNU1-132P-201ENST00000364300 164 ntBASIC4□□□□□ -1.77
SOX3P41225 RNA5SP366-201ENST00000365454 123 ntBASIC4□□□□□ -1.77
SOX3P41225 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
SOX3P41225 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC4□□□□□ -1.77
SOX3P41225 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
SOX3P41225 SNORA74C-2-201ENST00000411179 201 ntBASIC4□□□□□ -1.77
SOX3P41225 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC4□□□□□ -1.77
SOX3P41225 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4□□□□□ -1.77
SOX3P41225 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4□□□□□ -1.77
SOX3P41225 OR5AW1P-201ENST00000426334 1006 ntBASIC4□□□□□ -1.77
SOX3P41225 RSL24D1P6-201ENST00000426934 401 ntBASIC4□□□□□ -1.77
SOX3P41225 RPEP2-201ENST00000432149 701 ntBASIC4□□□□□ -1.77
SOX3P41225 ELOCP18-201ENST00000434209 337 ntBASIC4□□□□□ -1.77
SOX3P41225 PTGES3P1-201ENST00000439531 483 ntBASIC4□□□□□ -1.77
SOX3P41225 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC4□□□□□ -1.77
SOX3P41225 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4□□□□□ -1.77
SOX3P41225 AL031313.1-201ENST00000448435 256 ntBASIC4□□□□□ -1.77
SOX3P41225 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4□□□□□ -1.77
SOX3P41225 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC4□□□□□ -1.77
SOX3P41225 MTND2P8-201ENST00000450555 1025 ntBASIC4□□□□□ -1.77
SOX3P41225 AL354710.1-201ENST00000453641 246 ntBASIC4□□□□□ -1.77
SOX3P41225 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC4□□□□□ -1.77
SOX3P41225 RNU7-140P-201ENST00000459546 60 ntBASIC4□□□□□ -1.77
SOX3P41225 PPIAP21-201ENST00000464473 501 ntBASIC4□□□□□ -1.77
SOX3P41225 AC041039.1-201ENST00000485656 536 ntBASIC4□□□□□ -1.77
SOX3P41225 AC093267.1-201ENST00000489176 961 ntBASIC4□□□□□ -1.77
SOX3P41225 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
SOX3P41225 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC4□□□□□ -1.77
SOX3P41225 PARP4P3-201ENST00000510265 317 ntBASIC4□□□□□ -1.77
SOX3P41225 AC093752.1-206ENST00000511823 336 ntBASIC4□□□□□ -1.77
SOX3P41225 AF186190.1-201ENST00000517470 480 ntBASIC4□□□□□ -1.77
SOX3P41225 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4□□□□□ -1.77
SOX3P41225 AC124293.1-201ENST00000530034 493 ntBASIC4□□□□□ -1.77
SOX3P41225 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC4□□□□□ -1.77
SOX3P41225 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC4□□□□□ -1.77
SOX3P41225 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC4□□□□□ -1.77
SOX3P41225 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4□□□□□ -1.77
SOX3P41225 VN1R84P-201ENST00000593697 235 ntBASIC4□□□□□ -1.77
SOX3P41225 AL354984.3-201ENST00000604803 325 ntBASIC4□□□□□ -1.77
SOX3P41225 AC024060.1-201ENST00000607052 494 ntBASIC4□□□□□ -1.77
SOX3P41225 AL021997.2-201ENST00000615674 271 ntBASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms