Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC3.5□□□□□ -1.85
COL5A1P20908 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
COL5A1P20908 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.5□□□□□ -1.85
COL5A1P20908 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.5□□□□□ -1.85
COL5A1P20908 ADAM3B-201ENST00000569937 840 ntBASIC3.5□□□□□ -1.85
COL5A1P20908 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.5□□□□□ -1.85
COL5A1P20908 AC103858.2-201ENST00000621471 543 ntBASIC3.5□□□□□ -1.85
COL5A1P20908 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL5A1P20908 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL5A1P20908 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC3.5□□□□□ -1.85
COL5A1P20908 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
COL5A1P20908 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL5A1P20908 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL5A1P20908 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC3.49□□□□□ -1.85
COL5A1P20908 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL5A1P20908 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL5A1P20908 AC007685.1-201ENST00000329806 452 ntBASIC3.49□□□□□ -1.85
COL5A1P20908 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL5A1P20908 RN7SKP111-201ENST00000410349 271 ntBASIC3.49□□□□□ -1.85
COL5A1P20908 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC3.49□□□□□ -1.85
COL5A1P20908 AGGF1P3-201ENST00000493675 1213 ntBASIC3.49□□□□□ -1.85
COL5A1P20908 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC3.49□□□□□ -1.85
COL5A1P20908 RNU2-27P-201ENST00000516185 142 ntBASIC3.49□□□□□ -1.85
COL5A1P20908 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.49□□□□□ -1.85
COL5A1P20908 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.49□□□□□ -1.85
COL5A1P20908 AC092747.2-201ENST00000545069 983 ntBASIC3.49□□□□□ -1.85
COL5A1P20908 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.49□□□□□ -1.85
COL5A1P20908 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC3.49□□□□□ -1.85
COL5A1P20908 AC006116.10-201ENST00000591836 581 ntBASIC3.49□□□□□ -1.85
COL5A1P20908 AL359757.2-201ENST00000624309 274 ntBASIC3.49□□□□□ -1.85
COL5A1P20908 AC006386.2-201ENST00000624491 75 ntBASIC3.49□□□□□ -1.85
COL5A1P20908 AC012005.1-201ENST00000624575 75 ntBASIC3.49□□□□□ -1.85
COL5A1P20908 OR5AC4P-202ENST00000642086 985 ntBASIC3.49□□□□□ -1.85
COL5A1P20908 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.49□□□□□ -1.85
COL5A1P20908 AL022311.1-201ENST00000623726 19416 ntBASIC3.49□□□□□ -1.85
COL5A1P20908 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.49□□□□□ -1.85
COL5A1P20908 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
COL5A1P20908 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
COL5A1P20908 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL5A1P20908 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.49□□□□□ -1.85
COL5A1P20908 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL5A1P20908 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL5A1P20908 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.49□□□□□ -1.85
COL5A1P20908 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL5A1P20908 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
COL5A1P20908 MFSD8-233ENST00000641482 4860 ntBASIC3.49□□□□□ -1.85
COL5A1P20908 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
COL5A1P20908 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
COL5A1P20908 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL5A1P20908 BMS1P3-201ENST00000372011 932 ntBASIC3.49□□□□□ -1.85
COL5A1P20908 AL034403.1-201ENST00000399414 885 ntBASIC3.49□□□□□ -1.85
COL5A1P20908 UBA52P6-201ENST00000399822 382 ntBASIC3.49□□□□□ -1.85
COL5A1P20908 AL160275.2-201ENST00000412010 394 ntBASIC3.49□□□□□ -1.85
COL5A1P20908 RPL21P109-201ENST00000422213 475 ntBASIC3.49□□□□□ -1.85
COL5A1P20908 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.49□□□□□ -1.85
COL5A1P20908 RPS4XP2-201ENST00000458402 793 ntBASIC3.49□□□□□ -1.85
COL5A1P20908 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.49□□□□□ -1.85
COL5A1P20908 AC090877.1-201ENST00000561418 344 ntBASIC3.49□□□□□ -1.85
COL5A1P20908 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.49□□□□□ -1.85
COL5A1P20908 AC125494.3-201ENST00000602759 455 ntBASIC3.49□□□□□ -1.85
COL5A1P20908 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.49□□□□□ -1.85
COL5A1P20908 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL5A1P20908 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL5A1P20908 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.48□□□□□ -1.85
COL5A1P20908 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL5A1P20908 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL5A1P20908 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL5A1P20908 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL5A1P20908 SNORD17-201ENST00000390930 237 ntBASIC3.48□□□□□ -1.85
COL5A1P20908 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.48□□□□□ -1.85
COL5A1P20908 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.48□□□□□ -1.85
COL5A1P20908 RPL21P110-201ENST00000433345 446 ntBASIC3.48□□□□□ -1.85
COL5A1P20908 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.48□□□□□ -1.85
COL5A1P20908 AL645931.1-201ENST00000439737 410 ntBASIC3.48□□□□□ -1.85
COL5A1P20908 BTF3P5-201ENST00000457252 467 ntBASIC3.48□□□□□ -1.85
COL5A1P20908 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
COL5A1P20908 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.48□□□□□ -1.85
COL5A1P20908 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC3.48□□□□□ -1.85
COL5A1P20908 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.48□□□□□ -1.85
COL5A1P20908 AL353684.1-201ENST00000622677 1120 ntBASIC3.48□□□□□ -1.85
COL5A1P20908 AL359715.5-201ENST00000623431 443 ntBASIC3.48□□□□□ -1.85
COL5A1P20908 AC110801.1-201ENST00000623590 212 ntBASIC3.48□□□□□ -1.85
COL5A1P20908 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.48□□□□□ -1.85
COL5A1P20908 AC099654.11-201ENST00000638857 294 ntBASIC3.48□□□□□ -1.85
COL5A1P20908 AL353743.1-202ENST00000431724 1695 ntBASIC3.48□□□□□ -1.85
COL5A1P20908 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
COL5A1P20908 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL5A1P20908 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL5A1P20908 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL5A1P20908 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL5A1P20908 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC3.47□□□□□ -1.85
COL5A1P20908 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC3.47□□□□□ -1.85
COL5A1P20908 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL5A1P20908 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL5A1P20908 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL5A1P20908 MIR448-201ENST00000362131 111 ntBASIC3.47□□□□□ -1.85
COL5A1P20908 HLFP1-201ENST00000402375 499 ntBASIC3.47□□□□□ -1.85
COL5A1P20908 RNA5SP39-201ENST00000411245 120 ntBASIC3.47□□□□□ -1.85
COL5A1P20908 IFNNP1-201ENST00000429219 553 ntBASIC3.47□□□□□ -1.85
COL5A1P20908 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms