Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 RNU6-316P-201ENST00000391027 107 ntBASIC4.14□□□□□ -1.75
COL4A1P02462 HMGN1P24-201ENST00000412282 298 ntBASIC4.14□□□□□ -1.75
COL4A1P02462 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC4.14□□□□□ -1.75
COL4A1P02462 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
COL4A1P02462 AL353705.1-201ENST00000433468 480 ntBASIC4.14□□□□□ -1.75
COL4A1P02462 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC4.14□□□□□ -1.75
COL4A1P02462 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.14□□□□□ -1.75
COL4A1P02462 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC4.14□□□□□ -1.75
COL4A1P02462 UBE2DNL-203ENST00000474922 222 ntBASIC4.14□□□□□ -1.75
COL4A1P02462 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC4.14□□□□□ -1.75
COL4A1P02462 RNA5SP341-201ENST00000516261 117 ntBASIC4.14□□□□□ -1.75
COL4A1P02462 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.14□□□□□ -1.75
COL4A1P02462 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC4.14□□□□□ -1.75
COL4A1P02462 CR383656.14-201ENST00000551951 406 ntBASIC4.14□□□□□ -1.75
COL4A1P02462 AL121603.1-201ENST00000553815 142 ntBASIC4.14□□□□□ -1.75
COL4A1P02462 AL121576.1-201ENST00000556055 276 ntBASIC4.14□□□□□ -1.75
COL4A1P02462 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC4.14□□□□□ -1.75
COL4A1P02462 AC006363.1-201ENST00000603806 463 ntBASIC4.14□□□□□ -1.75
COL4A1P02462 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL4A1P02462 AC068647.1-201ENST00000489539 2265 ntBASIC4.14□□□□□ -1.75
COL4A1P02462 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL4A1P02462 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL4A1P02462 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC4.14□□□□□ -1.75
COL4A1P02462 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.13□□□□□ -1.75
COL4A1P02462 Z95331.1-201ENST00000623075 23112 ntBASIC4.13□□□□□ -1.75
COL4A1P02462 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A1P02462 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A1P02462 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A1P02462 OR10J6P-201ENST00000289731 930 ntBASIC4.13□□□□□ -1.75
COL4A1P02462 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A1P02462 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A1P02462 MTND2P11-201ENST00000423638 648 ntBASIC4.13□□□□□ -1.75
COL4A1P02462 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC4.13□□□□□ -1.75
COL4A1P02462 AC109925.1-201ENST00000478069 331 ntBASIC4.13□□□□□ -1.75
COL4A1P02462 RPS3AP14-201ENST00000483907 780 ntBASIC4.13□□□□□ -1.75
COL4A1P02462 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC4.13□□□□□ -1.75
COL4A1P02462 AC018442.3-201ENST00000523025 183 ntBASIC4.13□□□□□ -1.75
COL4A1P02462 AL121766.1-201ENST00000547436 487 ntBASIC4.13□□□□□ -1.75
COL4A1P02462 RN7SL371P-201ENST00000578099 267 ntBASIC4.13□□□□□ -1.75
COL4A1P02462 MIR4672-201ENST00000583126 81 ntBASIC4.13□□□□□ -1.75
COL4A1P02462 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.13□□□□□ -1.75
COL4A1P02462 MIMT1-201ENST00000597105 1050 ntBASIC4.13□□□□□ -1.75
COL4A1P02462 RNVU1-4-201ENST00000612985 164 ntBASIC4.13□□□□□ -1.75
COL4A1P02462 AL158062.1-201ENST00000619632 745 ntBASIC4.13□□□□□ -1.75
COL4A1P02462 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A1P02462 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A1P02462 AC083843.3-201ENST00000623679 2186 ntBASIC4.13□□□□□ -1.75
COL4A1P02462 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC4.13□□□□□ -1.75
COL4A1P02462 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A1P02462 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A1P02462 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A1P02462 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC4.13□□□□□ -1.75
COL4A1P02462 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A1P02462 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC4.13□□□□□ -1.75
COL4A1P02462 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A1P02462 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
COL4A1P02462 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.13□□□□□ -1.75
COL4A1P02462 AC002075.2-201ENST00000425207 252 ntBASIC4.13□□□□□ -1.75
COL4A1P02462 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.13□□□□□ -1.75
COL4A1P02462 HSPE1P16-201ENST00000426640 348 ntBASIC4.13□□□□□ -1.75
COL4A1P02462 BX119904.1-201ENST00000432026 348 ntBASIC4.13□□□□□ -1.75
COL4A1P02462 ANP32BP2-201ENST00000454525 545 ntBASIC4.13□□□□□ -1.75
COL4A1P02462 AC099560.2-201ENST00000457554 255 ntBASIC4.13□□□□□ -1.75
COL4A1P02462 TAF8-207ENST00000482432 556 ntTSL 2 BASIC4.13□□□□□ -1.75
COL4A1P02462 HMGB3P14-201ENST00000494195 599 ntBASIC4.13□□□□□ -1.75
COL4A1P02462 AC025445.1-201ENST00000502728 300 ntBASIC4.13□□□□□ -1.75
COL4A1P02462 AC098799.1-201ENST00000504752 800 ntBASIC4.13□□□□□ -1.75
COL4A1P02462 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC4.13□□□□□ -1.75
COL4A1P02462 FTH1P11-201ENST00000517577 551 ntBASIC4.13□□□□□ -1.75
COL4A1P02462 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A1P02462 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A1P02462 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.13□□□□□ -1.75
COL4A1P02462 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A1P02462 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL4A1P02462 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
COL4A1P02462 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL4A1P02462 YES1-203ENST00000577961 4554 ntTSL 5 BASIC4.12□□□□□ -1.75
COL4A1P02462 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC4.12□□□□□ -1.75
COL4A1P02462 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL4A1P02462 MTCO1P46-201ENST00000451639 1491 ntBASIC4.12□□□□□ -1.75
COL4A1P02462 AC093698.1-201ENST00000423843 571 ntBASIC4.12□□□□□ -1.75
COL4A1P02462 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC4.12□□□□□ -1.75
COL4A1P02462 AJ239321.1-201ENST00000424255 564 ntBASIC4.12□□□□□ -1.75
COL4A1P02462 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC4.12□□□□□ -1.75
COL4A1P02462 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC4.12□□□□□ -1.75
COL4A1P02462 NANOGNBP1-201ENST00000448444 480 ntBASIC4.12□□□□□ -1.75
COL4A1P02462 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC4.12□□□□□ -1.75
COL4A1P02462 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC4.12□□□□□ -1.75
COL4A1P02462 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.12□□□□□ -1.75
COL4A1P02462 AL360157.1-201ENST00000565962 87 ntBASIC4.12□□□□□ -1.75
COL4A1P02462 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.12□□□□□ -1.75
COL4A1P02462 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL4A1P02462 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL4A1P02462 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
COL4A1P02462 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL4A1P02462 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.11□□□□□ -1.75
COL4A1P02462 SNORA38.1-201ENST00000364172 131 ntBASIC4.11□□□□□ -1.75
COL4A1P02462 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL4A1P02462 AL160275.2-201ENST00000412010 394 ntBASIC4.11□□□□□ -1.75
COL4A1P02462 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms