Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC5.35□□□□□ -1.55
COL3A1P02461 RNU6-276P-201ENST00000516114 96 ntBASIC5.35□□□□□ -1.55
COL3A1P02461 AC087373.1-201ENST00000524920 491 ntBASIC5.35□□□□□ -1.55
COL3A1P02461 RFPL1S-203ENST00000539579 330 ntBASIC5.35□□□□□ -1.55
COL3A1P02461 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC5.35□□□□□ -1.55
COL3A1P02461 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC5.35□□□□□ -1.55
COL3A1P02461 AC120057.2-201ENST00000571520 271 ntBASIC5.35□□□□□ -1.55
COL3A1P02461 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC5.35□□□□□ -1.55
COL3A1P02461 MIR4286-201ENST00000580651 93 ntBASIC5.35□□□□□ -1.55
COL3A1P02461 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC5.35□□□□□ -1.55
COL3A1P02461 AL022067.1-201ENST00000602426 454 ntBASIC5.35□□□□□ -1.55
COL3A1P02461 MRPS35P3-201ENST00000603189 709 ntBASIC5.35□□□□□ -1.55
COL3A1P02461 AC104662.1-201ENST00000604448 511 ntBASIC5.35□□□□□ -1.55
COL3A1P02461 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC5.35□□□□□ -1.55
COL3A1P02461 AL512427.1-201ENST00000618593 349 ntBASIC5.35□□□□□ -1.55
COL3A1P02461 AP002782.1-201ENST00000623107 614 ntBASIC5.35□□□□□ -1.55
COL3A1P02461 AL359715.5-201ENST00000623431 443 ntBASIC5.35□□□□□ -1.55
COL3A1P02461 LINC00216-201ENST00000623548 1126 ntBASIC5.35□□□□□ -1.55
COL3A1P02461 AC019226.1-201ENST00000625666 515 ntBASIC5.35□□□□□ -1.55
COL3A1P02461 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC5.35□□□□□ -1.55
COL3A1P02461 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL3A1P02461 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL3A1P02461 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL3A1P02461 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL3A1P02461 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL3A1P02461 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
COL3A1P02461 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL3A1P02461 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL3A1P02461 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.35□□□□□ -1.55
COL3A1P02461 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL3A1P02461 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL3A1P02461 AL356473.1-201ENST00000406203 1408 ntBASIC5.34□□□□□ -1.55
COL3A1P02461 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL3A1P02461 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL3A1P02461 AL359837.1-201ENST00000381357 287 ntBASIC5.34□□□□□ -1.55
COL3A1P02461 AP002784.2-201ENST00000397300 549 ntBASIC5.34□□□□□ -1.55
COL3A1P02461 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC5.34□□□□□ -1.55
COL3A1P02461 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC5.34□□□□□ -1.55
COL3A1P02461 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC5.34□□□□□ -1.55
COL3A1P02461 AL365396.1-201ENST00000430854 671 ntBASIC5.34□□□□□ -1.55
COL3A1P02461 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC5.34□□□□□ -1.55
COL3A1P02461 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC5.34□□□□□ -1.55
COL3A1P02461 PTMAP3-201ENST00000447474 330 ntBASIC5.34□□□□□ -1.55
COL3A1P02461 NPM1P49-201ENST00000448027 714 ntBASIC5.34□□□□□ -1.55
COL3A1P02461 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC5.34□□□□□ -1.55
COL3A1P02461 NAP1L1P3-201ENST00000462291 880 ntBASIC5.34□□□□□ -1.55
COL3A1P02461 RPL31P61-201ENST00000496160 376 ntBASIC5.34□□□□□ -1.55
COL3A1P02461 AC006499.6-201ENST00000511169 607 ntBASIC5.34□□□□□ -1.55
COL3A1P02461 AC010625.1-201ENST00000511296 403 ntBASIC5.34□□□□□ -1.55
COL3A1P02461 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC5.34□□□□□ -1.55
COL3A1P02461 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC5.34□□□□□ -1.55
COL3A1P02461 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC5.34□□□□□ -1.55
COL3A1P02461 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL3A1P02461 MED28P5-201ENST00000528254 438 ntBASIC5.34□□□□□ -1.55
COL3A1P02461 CYP4A43P-201ENST00000568156 121 ntBASIC5.34□□□□□ -1.55
COL3A1P02461 AC064872.1-201ENST00000604823 1072 ntBASIC5.34□□□□□ -1.55
COL3A1P02461 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC5.34□□□□□ -1.55
COL3A1P02461 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC5.34□□□□□ -1.55
COL3A1P02461 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL3A1P02461 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL3A1P02461 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
COL3A1P02461 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL3A1P02461 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.34□□□□□ -1.56
COL3A1P02461 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.56
COL3A1P02461 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.56
COL3A1P02461 AL390036.1-202ENST00000634635 2439 ntTSL 5 BASIC5.34□□□□□ -1.56
COL3A1P02461 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC5.34□□□□□ -1.56
COL3A1P02461 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL3A1P02461 RNU1-108P-201ENST00000362556 161 ntBASIC5.33□□□□□ -1.56
COL3A1P02461 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL3A1P02461 AL445189.1-201ENST00000405722 338 ntBASIC5.33□□□□□ -1.56
COL3A1P02461 CYCSP19-201ENST00000411715 316 ntBASIC5.33□□□□□ -1.56
COL3A1P02461 BTF3L4P1-201ENST00000413813 468 ntBASIC5.33□□□□□ -1.56
COL3A1P02461 AC009237.5-201ENST00000414271 501 ntBASIC5.33□□□□□ -1.56
COL3A1P02461 EIF4EP1-201ENST00000422311 642 ntBASIC5.33□□□□□ -1.56
COL3A1P02461 MTND4P24-201ENST00000424002 397 ntBASIC5.33□□□□□ -1.56
COL3A1P02461 AL513321.1-201ENST00000441175 761 ntBASIC5.33□□□□□ -1.56
COL3A1P02461 TPTE2P6-202ENST00000445572 1007 ntBASIC5.33□□□□□ -1.56
COL3A1P02461 Z95327.1-201ENST00000446082 482 ntBASIC5.33□□□□□ -1.56
COL3A1P02461 RPS17P13-201ENST00000448974 407 ntBASIC5.33□□□□□ -1.56
COL3A1P02461 ZNF736P5Y-201ENST00000451173 805 ntBASIC5.33□□□□□ -1.56
COL3A1P02461 OFD1P7Y-201ENST00000454643 1155 ntBASIC5.33□□□□□ -1.56
COL3A1P02461 AC092155.2-201ENST00000454675 477 ntBASIC5.33□□□□□ -1.56
COL3A1P02461 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.33□□□□□ -1.56
COL3A1P02461 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL3A1P02461 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC5.33□□□□□ -1.56
COL3A1P02461 SAP18P1-201ENST00000512058 390 ntBASIC5.33□□□□□ -1.56
COL3A1P02461 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC5.33□□□□□ -1.56
COL3A1P02461 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL3A1P02461 SNORA19.3-201ENST00000516165 130 ntBASIC5.33□□□□□ -1.56
COL3A1P02461 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL3A1P02461 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC5.33□□□□□ -1.56
COL3A1P02461 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC5.33□□□□□ -1.56
COL3A1P02461 AC024909.2-201ENST00000553035 286 ntBASIC5.33□□□□□ -1.56
COL3A1P02461 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC5.33□□□□□ -1.56
COL3A1P02461 AL391156.1-201ENST00000554965 554 ntBASIC5.33□□□□□ -1.56
COL3A1P02461 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC5.33□□□□□ -1.56
COL3A1P02461 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.33□□□□□ -1.56
COL3A1P02461 SNX6P1-201ENST00000601728 1224 ntBASIC5.33□□□□□ -1.56
COL3A1P02461 AC107304.1-201ENST00000604229 296 ntBASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms