Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
SKA3Q8IX90 MIR383-201ENST00000362257 73 ntBASIC3.68□□□□□ -1.82
SKA3Q8IX90 RNU6-609P-201ENST00000365459 107 ntBASIC3.68□□□□□ -1.82
SKA3Q8IX90 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
SKA3Q8IX90 VTA1P1-201ENST00000414044 866 ntBASIC3.68□□□□□ -1.82
SKA3Q8IX90 AL158825.1-201ENST00000414735 521 ntBASIC3.68□□□□□ -1.82
SKA3Q8IX90 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SKA3Q8IX90 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC3.68□□□□□ -1.82
SKA3Q8IX90 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC3.68□□□□□ -1.82
SKA3Q8IX90 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SKA3Q8IX90 AL138785.1-201ENST00000425821 331 ntBASIC3.68□□□□□ -1.82
SKA3Q8IX90 COX6B1P7-201ENST00000430845 235 ntBASIC3.68□□□□□ -1.82
SKA3Q8IX90 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC3.68□□□□□ -1.82
SKA3Q8IX90 RPL23AP89-201ENST00000439324 255 ntBASIC3.68□□□□□ -1.82
SKA3Q8IX90 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SKA3Q8IX90 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC3.68□□□□□ -1.82
SKA3Q8IX90 ZNF736P6Y-201ENST00000447526 1213 ntBASIC3.68□□□□□ -1.82
SKA3Q8IX90 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC3.68□□□□□ -1.82
SKA3Q8IX90 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC3.68□□□□□ -1.82
SKA3Q8IX90 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC3.68□□□□□ -1.82
SKA3Q8IX90 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC3.68□□□□□ -1.82
SKA3Q8IX90 AC109327.1-201ENST00000471666 403 ntBASIC3.68□□□□□ -1.82
SKA3Q8IX90 UQCRHP4-201ENST00000471686 272 ntBASIC3.68□□□□□ -1.82
SKA3Q8IX90 MTND6P6-201ENST00000478031 263 ntBASIC3.68□□□□□ -1.82
SKA3Q8IX90 AF213884.1-201ENST00000488102 463 ntBASIC3.68□□□□□ -1.82
SKA3Q8IX90 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC3.68□□□□□ -1.82
SKA3Q8IX90 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC3.68□□□□□ -1.82
SKA3Q8IX90 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC3.68□□□□□ -1.82
SKA3Q8IX90 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC3.68□□□□□ -1.82
SKA3Q8IX90 AC111193.1-201ENST00000504097 155 ntBASIC3.68□□□□□ -1.82
SKA3Q8IX90 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SKA3Q8IX90 AC017037.1-201ENST00000508460 471 ntBASIC3.68□□□□□ -1.82
SKA3Q8IX90 AC133963.2-201ENST00000513686 578 ntBASIC3.68□□□□□ -1.82
SKA3Q8IX90 TRAPPC2P2-201ENST00000517589 409 ntBASIC3.68□□□□□ -1.82
SKA3Q8IX90 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.68□□□□□ -1.82
SKA3Q8IX90 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.68□□□□□ -1.82
SKA3Q8IX90 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC3.68□□□□□ -1.82
SKA3Q8IX90 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC3.68□□□□□ -1.82
SKA3Q8IX90 MTND4LP25-201ENST00000570218 163 ntBASIC3.68□□□□□ -1.82
SKA3Q8IX90 KPNA2P3-201ENST00000584190 848 ntBASIC3.68□□□□□ -1.82
SKA3Q8IX90 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC3.68□□□□□ -1.82
SKA3Q8IX90 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC3.68□□□□□ -1.82
SKA3Q8IX90 VN1R79P-201ENST00000593540 513 ntBASIC3.68□□□□□ -1.82
SKA3Q8IX90 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SKA3Q8IX90 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.68□□□□□ -1.82
SKA3Q8IX90 MLECP1-201ENST00000615893 709 ntBASIC3.68□□□□□ -1.82
SKA3Q8IX90 AC138907.10-201ENST00000623708 983 ntBASIC3.68□□□□□ -1.82
SKA3Q8IX90 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
SKA3Q8IX90 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC3.68□□□□□ -1.82
SKA3Q8IX90 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SKA3Q8IX90 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC3.68□□□□□ -1.82
SKA3Q8IX90 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SKA3Q8IX90 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
SKA3Q8IX90 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SKA3Q8IX90 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.67□□□□□ -1.82
SKA3Q8IX90 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.67□□□□□ -1.82
SKA3Q8IX90 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
SKA3Q8IX90 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
SKA3Q8IX90 LARP1BP1-201ENST00000506036 1359 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 AC005261.4-201ENST00000600047 1385 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.67□□□□□ -1.82
SKA3Q8IX90 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
SKA3Q8IX90 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC3.67□□□□□ -1.82
SKA3Q8IX90 RNU6-98P-201ENST00000384173 107 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 OR6C69P-201ENST00000394268 893 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 RN7SKP177-201ENST00000410567 355 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 AL158050.1-201ENST00000416077 457 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC3.67□□□□□ -1.82
SKA3Q8IX90 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC3.67□□□□□ -1.82
SKA3Q8IX90 RPL23AP38-201ENST00000423801 469 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 NPM1P24-201ENST00000428039 894 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 AC005189.1-201ENST00000431286 310 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC3.67□□□□□ -1.82
SKA3Q8IX90 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC3.67□□□□□ -1.82
SKA3Q8IX90 RPL7P29-201ENST00000437151 728 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC3.67□□□□□ -1.82
SKA3Q8IX90 NUTF2P3-201ENST00000448540 384 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC3.67□□□□□ -1.82
SKA3Q8IX90 RPL21P71-201ENST00000465598 459 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 NDUFA5P9-201ENST00000472609 340 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 PPIAP15-201ENST00000479662 484 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 AC026979.1-201ENST00000492525 396 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC3.67□□□□□ -1.82
SKA3Q8IX90 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC3.67□□□□□ -1.82
SKA3Q8IX90 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC3.67□□□□□ -1.82
SKA3Q8IX90 AC105233.3-201ENST00000531125 744 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 CYCSP29-201ENST00000533731 318 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.67□□□□□ -1.82
SKA3Q8IX90 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.67□□□□□ -1.82
SKA3Q8IX90 AC063950.1-201ENST00000552036 308 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC3.67□□□□□ -1.82
SKA3Q8IX90 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC3.67□□□□□ -1.82
SKA3Q8IX90 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC3.67□□□□□ -1.82
SKA3Q8IX90 AC106785.3-201ENST00000564064 847 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC3.67□□□□□ -1.82
SKA3Q8IX90 AC023575.1-201ENST00000580510 358 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 MIR3939-201ENST00000582614 106 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 AC110743.1-201ENST00000584870 478 ntBASIC3.67□□□□□ -1.82
SKA3Q8IX90 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC3.67□□□□□ -1.82
SKA3Q8IX90 AC010680.3-201ENST00000604215 520 ntBASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms