Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 OR5AW1P-201ENST00000426334 1006 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 AC008072.1-201ENST00000434254 824 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 B3GNT2P1-201ENST00000434960 952 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 HMGB1P31-201ENST00000437242 427 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 AC004865.1-201ENST00000442276 1003 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 AL591623.2-201ENST00000449978 222 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.32□□□□□ -1.56
USP39Q53GS9 AL121769.1-201ENST00000469473 401 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
USP39Q53GS9 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.32□□□□□ -1.56
USP39Q53GS9 FAM92A1P2-202ENST00000504766 877 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 WBP1LP4-201ENST00000505043 344 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 RNU6-507P-201ENST00000516045 100 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 RN7SKP260-201ENST00000516907 149 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 AC012400.1-201ENST00000518452 381 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 SMARCE1P4-201ENST00000523647 241 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC5.32□□□□□ -1.56
USP39Q53GS9 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC5.32□□□□□ -1.56
USP39Q53GS9 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP39Q53GS9 AC137768.1-201ENST00000549998 553 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC5.32□□□□□ -1.56
USP39Q53GS9 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC5.32□□□□□ -1.56
USP39Q53GS9 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.32□□□□□ -1.56
USP39Q53GS9 AC103881.1-201ENST00000603476 538 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 AC068276.1-201ENST00000605793 379 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 AL589743.7-201ENST00000612637 233 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 MIR6810-201ENST00000622701 70 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
USP39Q53GS9 AL157786.1-207ENST00000627771 695 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 AC116618.1-201ENST00000634617 774 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 OR5H6-203ENST00000642105 978 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.32□□□□□ -1.56
USP39Q53GS9 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP39Q53GS9 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
USP39Q53GS9 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.32□□□□□ -1.56
USP39Q53GS9 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP39Q53GS9 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
USP39Q53GS9 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
USP39Q53GS9 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.32□□□□□ -1.56
USP39Q53GS9 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
USP39Q53GS9 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.32□□□□□ -1.56
USP39Q53GS9 AC004158.1-201ENST00000564508 4319 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.31□□□□□ -1.56
USP39Q53GS9 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
USP39Q53GS9 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.31□□□□□ -1.56
USP39Q53GS9 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC5.31□□□□□ -1.56
USP39Q53GS9 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
USP39Q53GS9 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
USP39Q53GS9 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.31□□□□□ -1.56
USP39Q53GS9 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
USP39Q53GS9 FGF7P2-201ENST00000332473 296 ntBASIC5.31□□□□□ -1.56
USP39Q53GS9 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
USP39Q53GS9 RNU4-91P-201ENST00000364778 135 ntBASIC5.31□□□□□ -1.56
USP39Q53GS9 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC5.31□□□□□ -1.56
USP39Q53GS9 RNU6-1042P-201ENST00000384204 107 ntBASIC5.31□□□□□ -1.56
USP39Q53GS9 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
USP39Q53GS9 RPL23AP59-201ENST00000399415 461 ntBASIC5.31□□□□□ -1.56
USP39Q53GS9 RAB28P1-201ENST00000411517 641 ntBASIC5.31□□□□□ -1.56
USP39Q53GS9 AC079809.1-201ENST00000415468 276 ntBASIC5.31□□□□□ -1.56
USP39Q53GS9 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC5.31□□□□□ -1.56
USP39Q53GS9 COX6B1P1-201ENST00000415962 213 ntBASIC5.31□□□□□ -1.56
USP39Q53GS9 OR8F1P-201ENST00000425243 930 ntBASIC5.31□□□□□ -1.56
USP39Q53GS9 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.31□□□□□ -1.56
USP39Q53GS9 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.31□□□□□ -1.56
USP39Q53GS9 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC5.31□□□□□ -1.56
USP39Q53GS9 AL662791.1-201ENST00000441992 928 ntBASIC5.31□□□□□ -1.56
USP39Q53GS9 AC112653.1-201ENST00000443851 386 ntBASIC5.31□□□□□ -1.56
USP39Q53GS9 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.31□□□□□ -1.56
USP39Q53GS9 UBDP1-202ENST00000457888 382 ntBASIC5.31□□□□□ -1.56
USP39Q53GS9 RNA5SP269-201ENST00000459032 137 ntBASIC5.31□□□□□ -1.56
USP39Q53GS9 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC5.31□□□□□ -1.56
USP39Q53GS9 AC079395.1-201ENST00000510981 262 ntBASIC5.31□□□□□ -1.56
USP39Q53GS9 AL671862.1-201ENST00000515851 349 ntBASIC5.31□□□□□ -1.56
USP39Q53GS9 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.31□□□□□ -1.56
USP39Q53GS9 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC5.31□□□□□ -1.56
USP39Q53GS9 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC5.31□□□□□ -1.56
USP39Q53GS9 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC5.31□□□□□ -1.56
USP39Q53GS9 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
USP39Q53GS9 AC063949.1-201ENST00000552900 865 ntBASIC5.31□□□□□ -1.56
USP39Q53GS9 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
USP39Q53GS9 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC5.31□□□□□ -1.56
USP39Q53GS9 AC006272.2-201ENST00000594725 163 ntBASIC5.31□□□□□ -1.56
USP39Q53GS9 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC5.31□□□□□ -1.56
USP39Q53GS9 AL121757.2-201ENST00000611223 313 ntBASIC5.31□□□□□ -1.56
USP39Q53GS9 AC015722.2-201ENST00000622210 551 ntBASIC5.31□□□□□ -1.56
USP39Q53GS9 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC5.31□□□□□ -1.56
USP39Q53GS9 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.31□□□□□ -1.56
USP39Q53GS9 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
USP39Q53GS9 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
USP39Q53GS9 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
USP39Q53GS9 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.31□□□□□ -1.56
USP39Q53GS9 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
USP39Q53GS9 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.31□□□□□ -1.56
USP39Q53GS9 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.31□□□□□ -1.56
USP39Q53GS9 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
USP39Q53GS9 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
USP39Q53GS9 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
USP39Q53GS9 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
USP39Q53GS9 MTND5P17-201ENST00000418405 1603 ntBASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms