Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
CCDC88AQ3V6T2 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 RNA5SP374-201ENST00000362939 125 ntBASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 S100A11P2-201ENST00000467589 312 ntBASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 AL133457.1-201ENST00000564251 987 ntBASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 MIR5680-201ENST00000577577 84 ntBASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 AC026422.1-201ENST00000623961 452 ntBASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 AP000553.6-201ENST00000641242 118 ntBASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 AC004944.1-201ENST00000517807 3059 ntBASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 AL603766.1-201ENST00000407763 664 ntBASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 RNU2-27P-201ENST00000516185 142 ntBASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 RANP9-201ENST00000519957 271 ntBASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 AL390334.1-201ENST00000556395 450 ntBASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 MTCO3P22-201ENST00000603219 784 ntBASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC4.45□□□□□ -1.7
CCDC88AQ3V6T2 USP8P1-201ENST00000494673 3183 ntBASIC4.44□□□□□ -1.7
CCDC88AQ3V6T2 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC4.44□□□□□ -1.7
CCDC88AQ3V6T2 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.44□□□□□ -1.7
CCDC88AQ3V6T2 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC88AQ3V6T2 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC88AQ3V6T2 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
CCDC88AQ3V6T2 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.44□□□□□ -1.7
CCDC88AQ3V6T2 RNA5SP104-201ENST00000410989 118 ntBASIC4.44□□□□□ -1.7
CCDC88AQ3V6T2 AL160275.2-201ENST00000412010 394 ntBASIC4.44□□□□□ -1.7
CCDC88AQ3V6T2 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.44□□□□□ -1.7
CCDC88AQ3V6T2 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC4.44□□□□□ -1.7
CCDC88AQ3V6T2 AC096576.1-201ENST00000489014 359 ntBASIC4.44□□□□□ -1.7
CCDC88AQ3V6T2 AC004069.2-201ENST00000505438 1114 ntBASIC4.44□□□□□ -1.7
CCDC88AQ3V6T2 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC4.44□□□□□ -1.7
CCDC88AQ3V6T2 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC4.44□□□□□ -1.7
CCDC88AQ3V6T2 SNORA62.6-201ENST00000606322 83 ntBASIC4.44□□□□□ -1.7
CCDC88AQ3V6T2 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC88AQ3V6T2 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC88AQ3V6T2 AC093535.2-201ENST00000624769 2326 ntBASIC4.44□□□□□ -1.7
CCDC88AQ3V6T2 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.44□□□□□ -1.7
CCDC88AQ3V6T2 AC007685.1-201ENST00000329806 452 ntBASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 NACA3P-201ENST00000359690 648 ntBASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 RNA5SP197-201ENST00000363357 119 ntBASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 IARS-201ENST00000375627 697 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 AC000041.1-201ENST00000439655 175 ntBASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 SETD6P1-201ENST00000444575 317 ntBASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 RNU4ATAC17P-201ENST00000517272 120 ntBASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 AC011611.1-201ENST00000552179 197 ntBASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 KLKP1-201ENST00000595979 403 ntBASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 OR5AC4P-202ENST00000642086 985 ntBASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 AL365440.1-201ENST00000436135 2167 ntBASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 AC083843.2-201ENST00000568248 6253 ntBASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 AJ239321.1-201ENST00000424255 564 ntBASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 AC096638.2-201ENST00000434965 711 ntBASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 HMGB1P16-201ENST00000447155 540 ntBASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 HMGB3P22-202ENST00000451823 572 ntBASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 AC109458.1-201ENST00000508858 316 ntBASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 AL121594.4-201ENST00000556211 1196 ntBASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 AL360157.1-201ENST00000565962 87 ntBASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 AL162274.2-201ENST00000614406 332 ntBASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 MIR7112-201ENST00000616126 65 ntBASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC88AQ3V6T2 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.42□□□□□ -1.7
CCDC88AQ3V6T2 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC88AQ3V6T2 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC4.42□□□□□ -1.7
CCDC88AQ3V6T2 MIR448-201ENST00000362131 111 ntBASIC4.42□□□□□ -1.7
CCDC88AQ3V6T2 AC234772.1-201ENST00000377927 937 ntBASIC4.42□□□□□ -1.7
CCDC88AQ3V6T2 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4.42□□□□□ -1.7
CCDC88AQ3V6T2 RPL7P28-201ENST00000437739 740 ntBASIC4.42□□□□□ -1.7
CCDC88AQ3V6T2 IGKV1OR-3-201ENST00000446944 348 ntBASIC4.42□□□□□ -1.7
CCDC88AQ3V6T2 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC4.42□□□□□ -1.7
CCDC88AQ3V6T2 AC109925.1-201ENST00000478069 331 ntBASIC4.42□□□□□ -1.7
CCDC88AQ3V6T2 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms