Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 ARL4AP1-201ENST00000503220 705 ntBASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 MTATP6P22-201ENST00000507369 598 ntBASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 ATP1B1P1-201ENST00000509767 915 ntBASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 HSPE1P23-201ENST00000509838 286 ntBASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 AC027309.2-201ENST00000520566 192 ntBASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 AP003033.1-201ENST00000527244 415 ntBASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 AL121766.1-201ENST00000547436 487 ntBASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 TRAV15-201ENST00000556680 249 ntBASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 MIR3934-201ENST00000579806 107 ntBASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 PSMA6P4-201ENST00000603247 718 ntBASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 AC091946.2-201ENST00000606105 291 ntBASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 FAM25E-202ENST00000608562 189 ntBASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 AL627230.1-201ENST00000613077 211 ntBASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 AL591926.8-201ENST00000616876 211 ntBASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 AC091905.4-201ENST00000623432 202 ntBASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 EEF1A1P36-201ENST00000427807 1351 ntBASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC4.87□□□□□ -1.63
PTCHD3Q3KNS1 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 INTS6P1-201ENST00000504674 2530 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 AC025125.1-201ENST00000624743 1922 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 SNORA4.1-201ENST00000364263 144 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 SNORA66-201ENST00000384792 133 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 RNA5SP296-201ENST00000410523 111 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 RNU6-920P-201ENST00000410926 92 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 NPM1P40-201ENST00000412758 733 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 RBMY2KP-201ENST00000418221 992 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 AC104837.2-201ENST00000427236 424 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 RPS25P9-201ENST00000435591 252 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 ZDHHC20P1-204ENST00000435787 423 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 RAB11AP1-201ENST00000442978 646 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 NPM1P39-201ENST00000449818 867 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 AC108463.1-201ENST00000450258 347 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 AC002553.2-201ENST00000453217 340 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 NCOR1P1-202ENST00000486162 291 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 SETP14-201ENST00000497538 873 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 RPS27AP18-201ENST00000515536 459 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 RNU6-488P-201ENST00000515918 99 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 TBCA-206ENST00000518338 551 ntTSL 2 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 NAT2-202ENST00000520116 716 ntTSL 3 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 BRD9P1-201ENST00000529855 560 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 NMNAT1P1-201ENST00000554095 876 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 AC138915.2-201ENST00000569776 97 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 AC017100.2-201ENST00000584628 355 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 WISP1-OT1-201ENST00000602893 642 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 AP001981.2-201ENST00000603241 418 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 AC087783.2-201ENST00000605070 562 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 AL354760.1-201ENST00000608357 643 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 AC090425.2-201ENST00000608818 501 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 AC245297.2-201ENST00000610119 565 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 AC073114.1-201ENST00000612027 490 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 AC091953.3-201ENST00000623220 236 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 RBM12B-AS1-201ENST00000623283 653 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 AC098679.5-201ENST00000624394 571 ntBASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms