Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC3.79□□□□□ -1.8
LIM2P55344 MTND2P7-201ENST00000521337 640 ntBASIC3.79□□□□□ -1.8
LIM2P55344 SMARCE1P4-201ENST00000523647 241 ntBASIC3.79□□□□□ -1.8
LIM2P55344 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
LIM2P55344 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC3.79□□□□□ -1.8
LIM2P55344 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC3.79□□□□□ -1.8
LIM2P55344 HYKK-203ENST00000563233 734 ntTSL 2 BASIC3.79□□□□□ -1.8
LIM2P55344 AC106734.1-201ENST00000568646 663 ntBASIC3.79□□□□□ -1.8
LIM2P55344 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.79□□□□□ -1.8
LIM2P55344 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC3.79□□□□□ -1.8
LIM2P55344 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC3.79□□□□□ -1.8
LIM2P55344 AL355816.1-201ENST00000607951 118 ntBASIC3.79□□□□□ -1.8
LIM2P55344 AL163051.2-201ENST00000618976 735 ntBASIC3.79□□□□□ -1.8
LIM2P55344 AC006213.5-201ENST00000619673 288 ntBASIC3.79□□□□□ -1.8
LIM2P55344 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC3.79□□□□□ -1.8
LIM2P55344 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
LIM2P55344 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.79□□□□□ -1.8
LIM2P55344 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
LIM2P55344 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
LIM2P55344 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
LIM2P55344 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.79□□□□□ -1.8
LIM2P55344 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
LIM2P55344 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC3.78□□□□□ -1.8
LIM2P55344 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC3.78□□□□□ -1.8
LIM2P55344 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.78□□□□□ -1.8
LIM2P55344 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
LIM2P55344 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
LIM2P55344 SPRR2C-201ENST00000290702 219 ntBASIC3.78□□□□□ -1.8
LIM2P55344 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
LIM2P55344 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
LIM2P55344 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC3.78□□□□□ -1.8
LIM2P55344 MIR142-201ENST00000384835 87 ntBASIC3.78□□□□□ -1.8
LIM2P55344 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
LIM2P55344 RNU4-6P-201ENST00000410804 122 ntBASIC3.78□□□□□ -1.8
LIM2P55344 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC3.78□□□□□ -1.8
LIM2P55344 AC073310.1-201ENST00000423226 1033 ntBASIC3.78□□□□□ -1.8
LIM2P55344 AL691449.1-201ENST00000426570 421 ntBASIC3.78□□□□□ -1.8
LIM2P55344 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
LIM2P55344 AC004975.1-201ENST00000428733 208 ntBASIC3.78□□□□□ -1.8
LIM2P55344 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.78□□□□□ -1.8
LIM2P55344 AC005189.1-201ENST00000431286 310 ntBASIC3.78□□□□□ -1.8
LIM2P55344 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.78□□□□□ -1.8
LIM2P55344 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC3.78□□□□□ -1.8
LIM2P55344 TBCAP1-201ENST00000436520 327 ntBASIC3.78□□□□□ -1.8
LIM2P55344 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
LIM2P55344 RPL6P5-201ENST00000445678 828 ntBASIC3.78□□□□□ -1.8
LIM2P55344 MTND2P8-201ENST00000450555 1025 ntBASIC3.78□□□□□ -1.8
LIM2P55344 UBA52P3-201ENST00000491303 382 ntBASIC3.78□□□□□ -1.8
LIM2P55344 AL132838.2-201ENST00000492041 314 ntBASIC3.78□□□□□ -1.8
LIM2P55344 AC109458.1-201ENST00000508858 316 ntBASIC3.78□□□□□ -1.8
LIM2P55344 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC3.78□□□□□ -1.8
LIM2P55344 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC3.78□□□□□ -1.8
LIM2P55344 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC3.78□□□□□ -1.8
LIM2P55344 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC3.78□□□□□ -1.8
LIM2P55344 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC3.78□□□□□ -1.8
LIM2P55344 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.78□□□□□ -1.8
LIM2P55344 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC3.78□□□□□ -1.8
LIM2P55344 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.78□□□□□ -1.8
LIM2P55344 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC3.78□□□□□ -1.8
LIM2P55344 AC025260.1-201ENST00000548858 430 ntBASIC3.78□□□□□ -1.8
LIM2P55344 AC091516.1-201ENST00000549191 703 ntBASIC3.78□□□□□ -1.8
LIM2P55344 CR383656.14-201ENST00000551951 406 ntBASIC3.78□□□□□ -1.8
LIM2P55344 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC3.78□□□□□ -1.8
LIM2P55344 AC124283.4-201ENST00000581815 456 ntBASIC3.78□□□□□ -1.8
LIM2P55344 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.78□□□□□ -1.8
LIM2P55344 AC128687.2-201ENST00000609657 566 ntBASIC3.78□□□□□ -1.8
LIM2P55344 AC009318.3-201ENST00000616916 503 ntBASIC3.78□□□□□ -1.8
LIM2P55344 AC131238.1-201ENST00000617135 328 ntBASIC3.78□□□□□ -1.8
LIM2P55344 ZYXP1-201ENST00000617638 118 ntBASIC3.78□□□□□ -1.8
LIM2P55344 AC015726.3-201ENST00000624501 418 ntBASIC3.78□□□□□ -1.8
LIM2P55344 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
LIM2P55344 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
LIM2P55344 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.78□□□□□ -1.8
LIM2P55344 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
LIM2P55344 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
LIM2P55344 MTCO1P18-201ENST00000455518 1419 ntBASIC3.78□□□□□ -1.8
LIM2P55344 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.81
LIM2P55344 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
LIM2P55344 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.77□□□□□ -1.81
LIM2P55344 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
LIM2P55344 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
LIM2P55344 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
LIM2P55344 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.77□□□□□ -1.81
LIM2P55344 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.77□□□□□ -1.81
LIM2P55344 RNF6P1-201ENST00000444889 1784 ntBASIC3.77□□□□□ -1.81
LIM2P55344 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC3.77□□□□□ -1.81
LIM2P55344 MIR372-201ENST00000362225 67 ntBASIC3.77□□□□□ -1.81
LIM2P55344 RNA5SP399-201ENST00000364003 117 ntBASIC3.77□□□□□ -1.81
LIM2P55344 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
LIM2P55344 RNU6-98P-201ENST00000384173 107 ntBASIC3.77□□□□□ -1.81
LIM2P55344 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
LIM2P55344 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.77□□□□□ -1.81
LIM2P55344 AL158050.1-201ENST00000416077 457 ntBASIC3.77□□□□□ -1.81
LIM2P55344 AC093422.3-201ENST00000428506 305 ntBASIC3.77□□□□□ -1.81
LIM2P55344 AC073069.1-201ENST00000428657 441 ntBASIC3.77□□□□□ -1.81
LIM2P55344 ETF1P3-201ENST00000430422 1160 ntBASIC3.77□□□□□ -1.81
LIM2P55344 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC3.77□□□□□ -1.81
LIM2P55344 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.77□□□□□ -1.81
LIM2P55344 VN1R25P-201ENST00000443385 738 ntBASIC3.77□□□□□ -1.81
LIM2P55344 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms