Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
BRCA1P38398 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
BRCA1P38398 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
BRCA1P38398 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
BRCA1P38398 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
BRCA1P38398 AC093849.1-201ENST00000563631 2209 ntBASIC4.38□□□□□ -1.71
BRCA1P38398 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
BRCA1P38398 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
BRCA1P38398 AC010655.1-201ENST00000449336 292 ntBASIC4.38□□□□□ -1.71
BRCA1P38398 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC4.38□□□□□ -1.71
BRCA1P38398 AC022795.1-201ENST00000473808 480 ntBASIC4.38□□□□□ -1.71
BRCA1P38398 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
BRCA1P38398 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC4.38□□□□□ -1.71
BRCA1P38398 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.38□□□□□ -1.71
BRCA1P38398 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC4.38□□□□□ -1.71
BRCA1P38398 UBE3AP2-201ENST00000429033 2259 ntBASIC4.38□□□□□ -1.71
BRCA1P38398 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.38□□□□□ -1.71
BRCA1P38398 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
BRCA1P38398 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
BRCA1P38398 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
BRCA1P38398 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
BRCA1P38398 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
BRCA1P38398 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
BRCA1P38398 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
BRCA1P38398 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
BRCA1P38398 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC4.37□□□□□ -1.71
BRCA1P38398 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.37□□□□□ -1.71
BRCA1P38398 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
BRCA1P38398 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.37□□□□□ -1.71
BRCA1P38398 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
BRCA1P38398 RNU1-140P-201ENST00000365040 165 ntBASIC4.37□□□□□ -1.71
BRCA1P38398 BX323014.1-201ENST00000412876 237 ntBASIC4.37□□□□□ -1.71
BRCA1P38398 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.37□□□□□ -1.71
BRCA1P38398 SDCBPP2-201ENST00000424643 885 ntBASIC4.37□□□□□ -1.71
BRCA1P38398 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC4.37□□□□□ -1.71
BRCA1P38398 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.37□□□□□ -1.71
BRCA1P38398 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC4.37□□□□□ -1.71
BRCA1P38398 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC4.37□□□□□ -1.71
BRCA1P38398 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC4.37□□□□□ -1.71
BRCA1P38398 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC4.37□□□□□ -1.71
BRCA1P38398 AL390816.3-201ENST00000604527 1066 ntBASIC4.37□□□□□ -1.71
BRCA1P38398 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC4.37□□□□□ -1.71
BRCA1P38398 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.37□□□□□ -1.71
BRCA1P38398 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.37□□□□□ -1.71
BRCA1P38398 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
BRCA1P38398 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
BRCA1P38398 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
BRCA1P38398 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
BRCA1P38398 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
BRCA1P38398 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC4.37□□□□□ -1.71
BRCA1P38398 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
BRCA1P38398 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
BRCA1P38398 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.37□□□□□ -1.71
BRCA1P38398 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
BRCA1P38398 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC4.37□□□□□ -1.71
BRCA1P38398 AC234781.4-201ENST00000419384 244 ntBASIC4.37□□□□□ -1.71
BRCA1P38398 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC4.37□□□□□ -1.71
BRCA1P38398 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC4.37□□□□□ -1.71
BRCA1P38398 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
BRCA1P38398 CUL4AP1-201ENST00000514750 1863 ntBASIC4.37□□□□□ -1.71
BRCA1P38398 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
BRCA1P38398 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.36□□□□□ -1.71
BRCA1P38398 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
BRCA1P38398 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
BRCA1P38398 AC233263.6-201ENST00000631132 1963 ntBASIC4.36□□□□□ -1.71
BRCA1P38398 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
BRCA1P38398 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
BRCA1P38398 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
BRCA1P38398 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
BRCA1P38398 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
BRCA1P38398 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
BRCA1P38398 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.36□□□□□ -1.71
BRCA1P38398 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
BRCA1P38398 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC4.36□□□□□ -1.71
BRCA1P38398 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.36□□□□□ -1.71
BRCA1P38398 RNU6-729P-201ENST00000384399 107 ntBASIC4.36□□□□□ -1.71
BRCA1P38398 GSTA8P-201ENST00000404253 637 ntBASIC4.36□□□□□ -1.71
BRCA1P38398 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC4.36□□□□□ -1.71
BRCA1P38398 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.36□□□□□ -1.71
BRCA1P38398 MTND4LP21-201ENST00000415303 295 ntBASIC4.36□□□□□ -1.71
BRCA1P38398 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC4.36□□□□□ -1.71
BRCA1P38398 AC106901.1-201ENST00000425086 698 ntBASIC4.36□□□□□ -1.71
BRCA1P38398 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC4.36□□□□□ -1.71
BRCA1P38398 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC4.36□□□□□ -1.71
BRCA1P38398 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
BRCA1P38398 AP001992.1-205ENST00000462248 379 ntBASIC4.36□□□□□ -1.71
BRCA1P38398 RPL27AP5-201ENST00000469428 449 ntBASIC4.36□□□□□ -1.71
BRCA1P38398 AC073522.1-201ENST00000483312 377 ntBASIC4.36□□□□□ -1.71
BRCA1P38398 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.36□□□□□ -1.71
BRCA1P38398 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC4.36□□□□□ -1.71
BRCA1P38398 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC4.36□□□□□ -1.71
BRCA1P38398 CR383656.14-201ENST00000551951 406 ntBASIC4.36□□□□□ -1.71
BRCA1P38398 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC4.36□□□□□ -1.71
BRCA1P38398 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC4.36□□□□□ -1.71
BRCA1P38398 AC006272.2-201ENST00000594725 163 ntBASIC4.36□□□□□ -1.71
BRCA1P38398 ACTR3BP1-201ENST00000605584 1247 ntBASIC4.36□□□□□ -1.71
BRCA1P38398 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC4.36□□□□□ -1.71
BRCA1P38398 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
BRCA1P38398 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
BRCA1P38398 AC011503.2-201ENST00000594230 1500 ntBASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms