Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC011266.1-201ENST00000624119 3569 ntBASIC4.36□□□□□ -1.71
SCN4AP35499 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SCN4AP35499 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
SCN4AP35499 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
SCN4AP35499 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
SCN4AP35499 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
SCN4AP35499 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.36□□□□□ -1.71
SCN4AP35499 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.35□□□□□ -1.71
SCN4AP35499 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.35□□□□□ -1.71
SCN4AP35499 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
SCN4AP35499 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.35□□□□□ -1.71
SCN4AP35499 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC4.35□□□□□ -1.71
SCN4AP35499 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SCN4AP35499 MTND6P32-201ENST00000457611 483 ntBASIC4.35□□□□□ -1.71
SCN4AP35499 AC023141.12-201ENST00000512399 199 ntBASIC4.35□□□□□ -1.71
SCN4AP35499 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC4.35□□□□□ -1.71
SCN4AP35499 AL359715.5-201ENST00000623431 443 ntBASIC4.35□□□□□ -1.71
SCN4AP35499 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.35□□□□□ -1.71
SCN4AP35499 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
SCN4AP35499 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.35□□□□□ -1.71
SCN4AP35499 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SCN4AP35499 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.35□□□□□ -1.71
SCN4AP35499 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SCN4AP35499 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.35□□□□□ -1.71
SCN4AP35499 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SCN4AP35499 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SCN4AP35499 ANKRD36P1-201ENST00000344424 659 ntBASIC4.35□□□□□ -1.71
SCN4AP35499 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
SCN4AP35499 MIR513A2-201ENST00000385249 127 ntBASIC4.35□□□□□ -1.71
SCN4AP35499 UBE2V1P2-201ENST00000397758 440 ntBASIC4.35□□□□□ -1.71
SCN4AP35499 AC002524.1-201ENST00000411687 547 ntBASIC4.35□□□□□ -1.71
SCN4AP35499 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC4.35□□□□□ -1.71
SCN4AP35499 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC4.35□□□□□ -1.71
SCN4AP35499 RPS6P2-201ENST00000454208 705 ntBASIC4.35□□□□□ -1.71
SCN4AP35499 AC133473.1-201ENST00000455173 299 ntBASIC4.35□□□□□ -1.71
SCN4AP35499 RPL23AP71-201ENST00000470966 469 ntBASIC4.35□□□□□ -1.71
SCN4AP35499 AC020893.1-201ENST00000502452 580 ntBASIC4.35□□□□□ -1.71
SCN4AP35499 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC4.35□□□□□ -1.71
SCN4AP35499 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC4.35□□□□□ -1.71
SCN4AP35499 RNA5SP208-201ENST00000516156 78 ntBASIC4.35□□□□□ -1.71
SCN4AP35499 AL606834.2-201ENST00000602954 668 ntBASIC4.35□□□□□ -1.71
SCN4AP35499 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SCN4AP35499 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.35□□□□□ -1.71
SCN4AP35499 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.34□□□□□ -1.71
SCN4AP35499 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.34□□□□□ -1.71
SCN4AP35499 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
SCN4AP35499 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SCN4AP35499 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SCN4AP35499 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
SCN4AP35499 MTND4LP20-201ENST00000402379 270 ntBASIC4.34□□□□□ -1.71
SCN4AP35499 HLA-N-201ENST00000437516 135 ntBASIC4.34□□□□□ -1.71
SCN4AP35499 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC4.34□□□□□ -1.71
SCN4AP35499 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC4.34□□□□□ -1.71
SCN4AP35499 AC006445.1-201ENST00000491925 405 ntBASIC4.34□□□□□ -1.71
SCN4AP35499 RNU6ATAC39P-201ENST00000516309 149 ntBASIC4.34□□□□□ -1.71
SCN4AP35499 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC4.34□□□□□ -1.71
SCN4AP35499 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC4.34□□□□□ -1.71
SCN4AP35499 AL451049.1-201ENST00000608672 497 ntBASIC4.34□□□□□ -1.71
SCN4AP35499 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
SCN4AP35499 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC4.34□□□□□ -1.72
SCN4AP35499 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.34□□□□□ -1.72
SCN4AP35499 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
SCN4AP35499 AL355596.1-201ENST00000565399 3996 ntBASIC4.34□□□□□ -1.72
SCN4AP35499 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
SCN4AP35499 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SCN4AP35499 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SCN4AP35499 MTCO1P22-201ENST00000604619 1360 ntBASIC4.33□□□□□ -1.72
SCN4AP35499 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SCN4AP35499 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SCN4AP35499 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SCN4AP35499 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SCN4AP35499 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SCN4AP35499 USP8P1-201ENST00000494673 3183 ntBASIC4.33□□□□□ -1.72
SCN4AP35499 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SCN4AP35499 RNA5SP424-201ENST00000390988 115 ntBASIC4.33□□□□□ -1.72
SCN4AP35499 AL121594.4-201ENST00000556211 1196 ntBASIC4.33□□□□□ -1.72
SCN4AP35499 AC010653.1-201ENST00000571108 881 ntBASIC4.33□□□□□ -1.72
SCN4AP35499 CKS1BP3-201ENST00000600888 237 ntBASIC4.33□□□□□ -1.72
SCN4AP35499 MIR7851-201ENST00000610611 160 ntBASIC4.33□□□□□ -1.72
SCN4AP35499 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.33□□□□□ -1.72
SCN4AP35499 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SCN4AP35499 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SCN4AP35499 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.33□□□□□ -1.72
SCN4AP35499 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
SCN4AP35499 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC4.33□□□□□ -1.72
SCN4AP35499 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC4.32□□□□□ -1.72
SCN4AP35499 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SCN4AP35499 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SCN4AP35499 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC4.32□□□□□ -1.72
SCN4AP35499 CYP4A43P-201ENST00000568156 121 ntBASIC4.32□□□□□ -1.72
SCN4AP35499 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC4.32□□□□□ -1.72
SCN4AP35499 AL162274.2-201ENST00000614406 332 ntBASIC4.32□□□□□ -1.72
SCN4AP35499 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC4.32□□□□□ -1.72
SCN4AP35499 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
SCN4AP35499 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
SCN4AP35499 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
SCN4AP35499 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
SCN4AP35499 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
SCN4AP35499 AC090337.1-201ENST00000579651 2074 ntBASIC4.32□□□□□ -1.72
SCN4AP35499 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 136.7 ms