Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 MTND2P4-201ENST00000445034 1004 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC5.37□□□□□ -1.55
COL3A1P02461 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC5.37□□□□□ -1.55
COL3A1P02461 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC5.37□□□□□ -1.55
COL3A1P02461 RPS26P28-201ENST00000470806 348 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 MTCO3P35-201ENST00000485582 781 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 RPL7P24-201ENST00000493052 752 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 SSR3-208ENST00000496050 579 ntTSL 4 BASIC5.37□□□□□ -1.55
COL3A1P02461 AC091860.1-201ENST00000505723 432 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 NRON-201ENST00000517270 370 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC5.37□□□□□ -1.55
COL3A1P02461 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.37□□□□□ -1.55
COL3A1P02461 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC5.37□□□□□ -1.55
COL3A1P02461 AC069240.1-201ENST00000548774 375 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC5.37□□□□□ -1.55
COL3A1P02461 RPL23AP87-202ENST00000573039 466 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 AC103987.3-201ENST00000582071 292 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 AC124856.1-201ENST00000600819 896 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 NTAN1P1-201ENST00000603150 646 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 AC245297.2-201ENST00000610119 565 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 AC034229.5-201ENST00000624258 185 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 AL603839.4-201ENST00000624658 1005 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC5.37□□□□□ -1.55
COL3A1P02461 MAPK10-303ENST00000641324 3959 ntBASIC5.37□□□□□ -1.55
COL3A1P02461 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL3A1P02461 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL3A1P02461 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL3A1P02461 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC5.36□□□□□ -1.55
COL3A1P02461 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC5.36□□□□□ -1.55
COL3A1P02461 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC5.36□□□□□ -1.55
COL3A1P02461 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
COL3A1P02461 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
COL3A1P02461 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
COL3A1P02461 RNA5SP513-201ENST00000364648 118 ntBASIC5.36□□□□□ -1.55
COL3A1P02461 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL3A1P02461 RNU6-298P-201ENST00000390888 96 ntBASIC5.36□□□□□ -1.55
COL3A1P02461 AC096533.1-201ENST00000411645 353 ntBASIC5.36□□□□□ -1.55
COL3A1P02461 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC5.36□□□□□ -1.55
COL3A1P02461 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC5.36□□□□□ -1.55
COL3A1P02461 OR8F1P-201ENST00000425243 930 ntBASIC5.36□□□□□ -1.55
COL3A1P02461 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC5.36□□□□□ -1.55
COL3A1P02461 AL589823.1-201ENST00000429577 183 ntBASIC5.36□□□□□ -1.55
COL3A1P02461 NPM1P25-201ENST00000429734 854 ntBASIC5.36□□□□□ -1.55
COL3A1P02461 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL3A1P02461 AC007000.2-201ENST00000442564 487 ntBASIC5.36□□□□□ -1.55
COL3A1P02461 ANKRD26P4-201ENST00000455755 950 ntBASIC5.36□□□□□ -1.55
COL3A1P02461 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC5.36□□□□□ -1.55
COL3A1P02461 MTND4LP3-201ENST00000468320 276 ntBASIC5.36□□□□□ -1.55
COL3A1P02461 PANCR-201ENST00000503456 493 ntTSL 5 BASIC5.36□□□□□ -1.55
COL3A1P02461 PPBPP1-201ENST00000510807 373 ntBASIC5.36□□□□□ -1.55
COL3A1P02461 SCARNA14-201ENST00000516903 136 ntBASIC5.36□□□□□ -1.55
COL3A1P02461 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC5.36□□□□□ -1.55
COL3A1P02461 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC5.36□□□□□ -1.55
COL3A1P02461 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL3A1P02461 OR5D2P-201ENST00000524390 911 ntBASIC5.36□□□□□ -1.55
COL3A1P02461 LYZ-203ENST00000549690 669 ntTSL 2 BASIC5.36□□□□□ -1.55
COL3A1P02461 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC5.36□□□□□ -1.55
COL3A1P02461 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL3A1P02461 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC5.36□□□□□ -1.55
COL3A1P02461 AC010735.1-201ENST00000567305 1026 ntBASIC5.36□□□□□ -1.55
COL3A1P02461 AC053481.3-201ENST00000577881 843 ntBASIC5.36□□□□□ -1.55
COL3A1P02461 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC5.36□□□□□ -1.55
COL3A1P02461 AC053481.4-201ENST00000583164 216 ntBASIC5.36□□□□□ -1.55
COL3A1P02461 AC006130.2-201ENST00000586202 326 ntBASIC5.36□□□□□ -1.55
COL3A1P02461 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC5.36□□□□□ -1.55
COL3A1P02461 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC5.36□□□□□ -1.55
COL3A1P02461 AL583856.2-201ENST00000606298 543 ntBASIC5.36□□□□□ -1.55
COL3A1P02461 AC123767.1-202ENST00000620407 817 ntBASIC5.36□□□□□ -1.55
COL3A1P02461 AC090582.1-201ENST00000636321 199 ntBASIC5.36□□□□□ -1.55
COL3A1P02461 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
COL3A1P02461 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL3A1P02461 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL3A1P02461 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC5.36□□□□□ -1.55
COL3A1P02461 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL3A1P02461 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL3A1P02461 CARF-208ENST00000428585 2513 ntTSL 2 BASIC5.36□□□□□ -1.55
COL3A1P02461 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC5.35□□□□□ -1.55
COL3A1P02461 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
COL3A1P02461 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL3A1P02461 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL3A1P02461 RNU6-670P-201ENST00000364312 104 ntBASIC5.35□□□□□ -1.55
COL3A1P02461 RNU4-24P-201ENST00000364565 139 ntBASIC5.35□□□□□ -1.55
COL3A1P02461 RNU1-64P-201ENST00000365443 163 ntBASIC5.35□□□□□ -1.55
COL3A1P02461 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
COL3A1P02461 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL3A1P02461 RNU6-152P-201ENST00000384037 107 ntBASIC5.35□□□□□ -1.55
COL3A1P02461 RNU6-213P-201ENST00000384051 104 ntBASIC5.35□□□□□ -1.55
COL3A1P02461 RNU6-906P-201ENST00000384700 70 ntBASIC5.35□□□□□ -1.55
COL3A1P02461 RPL5P19-201ENST00000404228 893 ntBASIC5.35□□□□□ -1.55
COL3A1P02461 TIMM9P2-201ENST00000419324 266 ntBASIC5.35□□□□□ -1.55
COL3A1P02461 AC241520.1-201ENST00000422654 1099 ntBASIC5.35□□□□□ -1.55
COL3A1P02461 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL3A1P02461 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL3A1P02461 AL035407.1-201ENST00000429211 571 ntBASIC5.35□□□□□ -1.55
COL3A1P02461 AC092447.2-201ENST00000435487 669 ntBASIC5.35□□□□□ -1.55
COL3A1P02461 MTCO1P53-201ENST00000441633 699 ntBASIC5.35□□□□□ -1.55
COL3A1P02461 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC5.35□□□□□ -1.55
COL3A1P02461 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC5.35□□□□□ -1.55
COL3A1P02461 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC5.35□□□□□ -1.55
COL3A1P02461 RPS4XP15-201ENST00000489210 795 ntBASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms