Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MTCO3P21-201ENST00000430791 643 ntBASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 AC093166.4-201ENST00000457867 318 ntBASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 RPL35P6-201ENST00000490024 372 ntBASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 SNORD46.2-201ENST00000516021 102 ntBASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 AP000790.1-201ENST00000528891 737 ntBASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 HMGN2P36-201ENST00000529541 409 ntBASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 OR4A12P-201ENST00000530847 918 ntBASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 AL845331.3-202ENST00000562856 261 ntBASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 AC009101.1-201ENST00000568135 242 ntBASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 CKS1BP3-201ENST00000600888 237 ntBASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 AC078795.3-201ENST00000602913 472 ntBASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 AC010680.3-201ENST00000604215 520 ntBASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 AC010338.1-201ENST00000621823 717 ntBASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 AC009268.2-201ENST00000621925 457 ntBASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 AC091905.1-201ENST00000624400 311 ntBASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 AP004607.3-201ENST00000530354 3915 ntBASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 HSPA8P17-201ENST00000427029 1382 ntBASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 AC138915.3-201ENST00000562908 1389 ntBASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.49□□□□□ -1.53
PTCHD1Q96NR3 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 USP9YP4-201ENST00000424401 1745 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 ZNF680P1-201ENST00000436625 1469 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 GNG5P1-201ENST00000255500 204 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 RNA5SP500-201ENST00000364486 119 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 HMGB1P17-201ENST00000403495 628 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 ZNF90P2-204ENST00000419323 1075 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 RPS27AP6-201ENST00000427962 448 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 RPS29P14-201ENST00000431518 171 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 RPL22P17-201ENST00000438729 315 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 AC093019.1-201ENST00000443135 252 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 AC073109.1-201ENST00000445066 978 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 HMGN3P1-201ENST00000453847 193 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 AL133244.1-201ENST00000456007 258 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 AC006390.1-201ENST00000508068 283 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 EIF3KP3-201ENST00000514461 639 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 SNORA70.20-201ENST00000516848 126 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 OR8L1P-201ENST00000534005 955 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 CBX3P5-201ENST00000552017 521 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 AL359212.1-201ENST00000556608 614 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 SULT1C2P1-202ENST00000562418 459 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 AC127024.5-201ENST00000580085 462 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 AC011840.5-201ENST00000582125 771 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 MIR4260-201ENST00000583107 67 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 AC115085.1-201ENST00000588924 229 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 AC008521.2-201ENST00000591021 259 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 AC005261.5-201ENST00000596280 355 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 RPL12P25-202ENST00000598100 674 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 AC012507.3-201ENST00000603556 477 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 AC011816.2-201ENST00000607089 556 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 AC019193.2-201ENST00000610012 634 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 AC026523.2-201ENST00000625039 7739 ntBASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
PTCHD1Q96NR3 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms