Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 UBBP1-201ENST00000392399 473 ntBASIC6.19□□□□□ -1.42
MSX1P28360 SOD2P1-201ENST00000396543 562 ntBASIC6.19□□□□□ -1.42
MSX1P28360 RNU6ATAC23P-201ENST00000408448 123 ntBASIC6.19□□□□□ -1.42
MSX1P28360 Y_RNA.646-201ENST00000410980 101 ntBASIC6.19□□□□□ -1.42
MSX1P28360 VDAC1P9-201ENST00000412766 841 ntBASIC6.19□□□□□ -1.42
MSX1P28360 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC6.19□□□□□ -1.42
MSX1P28360 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC6.19□□□□□ -1.42
MSX1P28360 AL359962.1-201ENST00000417969 303 ntTSL 5 BASIC6.19□□□□□ -1.42
MSX1P28360 RPL7AP51-201ENST00000422016 760 ntBASIC6.19□□□□□ -1.42
MSX1P28360 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC6.19□□□□□ -1.42
MSX1P28360 AC239367.3-201ENST00000428996 814 ntBASIC6.19□□□□□ -1.42
MSX1P28360 AC114495.1-201ENST00000441274 436 ntBASIC6.19□□□□□ -1.42
MSX1P28360 SNRPBP1-201ENST00000443634 282 ntBASIC6.19□□□□□ -1.42
MSX1P28360 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC6.19□□□□□ -1.42
MSX1P28360 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC6.19□□□□□ -1.42
MSX1P28360 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC6.19□□□□□ -1.42
MSX1P28360 AC091849.1-201ENST00000509920 121 ntBASIC6.19□□□□□ -1.42
MSX1P28360 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC6.19□□□□□ -1.42
MSX1P28360 AC093878.1-201ENST00000515630 432 ntBASIC6.19□□□□□ -1.42
MSX1P28360 AC117373.1-201ENST00000544036 392 ntTSL 3 BASIC6.19□□□□□ -1.42
MSX1P28360 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC6.19□□□□□ -1.42
MSX1P28360 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC6.19□□□□□ -1.42
MSX1P28360 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC6.19□□□□□ -1.42
MSX1P28360 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC6.19□□□□□ -1.42
MSX1P28360 MIR4271-201ENST00000582451 67 ntBASIC6.19□□□□□ -1.42
MSX1P28360 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC6.19□□□□□ -1.42
MSX1P28360 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC6.19□□□□□ -1.42
MSX1P28360 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC6.19□□□□□ -1.42
MSX1P28360 AC020765.1-201ENST00000604296 328 ntBASIC6.19□□□□□ -1.42
MSX1P28360 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC6.19□□□□□ -1.42
MSX1P28360 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC6.19□□□□□ -1.42
MSX1P28360 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC6.19□□□□□ -1.42
MSX1P28360 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC6.19□□□□□ -1.42
MSX1P28360 Six3os1_4.1-201ENST00000615706 324 ntBASIC6.19□□□□□ -1.42
MSX1P28360 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC6.19□□□□□ -1.42
MSX1P28360 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC6.19□□□□□ -1.42
MSX1P28360 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC6.19□□□□□ -1.42
MSX1P28360 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC6.19□□□□□ -1.42
MSX1P28360 AL355480.1-201ENST00000629041 99 ntBASIC6.19□□□□□ -1.42
MSX1P28360 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
MSX1P28360 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
MSX1P28360 API5P2-201ENST00000397055 1498 ntBASIC6.19□□□□□ -1.42
MSX1P28360 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
MSX1P28360 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSX1P28360 NXF2B-205ENST00000618881 3193 ntTSL 2 BASIC6.19□□□□□ -1.42
MSX1P28360 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
MSX1P28360 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
MSX1P28360 SCRN1-202ENST00000409497 1732 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
MSX1P28360 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
MSX1P28360 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC6.19□□□□□ -1.42
MSX1P28360 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
MSX1P28360 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC6.19□□□□□ -1.42
MSX1P28360 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
MSX1P28360 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC6.18□□□□□ -1.42
MSX1P28360 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
MSX1P28360 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSX1P28360 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSX1P28360 ZHX3-205ENST00000432768 3551 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
MSX1P28360 JPX-212ENST00000639185 9658 ntTSL 5 BASIC6.18□□□□□ -1.42
MSX1P28360 KIAA1524-207ENST00000619684 2839 ntAPPRIS ALT1 TSL 5 BASIC6.18□□□□□ -1.42
MSX1P28360 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC6.18□□□□□ -1.42
MSX1P28360 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC6.18□□□□□ -1.42
MSX1P28360 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC6.18□□□□□ -1.42
MSX1P28360 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
MSX1P28360 AC121333.1-201ENST00000567488 2709 ntBASIC6.18□□□□□ -1.42
MSX1P28360 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
MSX1P28360 TRIM6-TRIM34-201ENST00000354852 3391 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
MSX1P28360 HERC4-211ENST00000492996 3385 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
MSX1P28360 MAPK10-383ENST00000642032 3390 ntBASIC6.18□□□□□ -1.42
MSX1P28360 TRIM34-201ENST00000429814 2311 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSX1P28360 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSX1P28360 AC010894.1-201ENST00000313760 361 ntBASIC6.18□□□□□ -1.42
MSX1P28360 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
MSX1P28360 RNU1-5P-201ENST00000362684 144 ntBASIC6.18□□□□□ -1.42
MSX1P28360 Y_RNA.153-201ENST00000363615 91 ntBASIC6.18□□□□□ -1.42
MSX1P28360 RNU1-85P-201ENST00000364127 164 ntBASIC6.18□□□□□ -1.42
MSX1P28360 SNORA70.3-201ENST00000365075 132 ntBASIC6.18□□□□□ -1.42
MSX1P28360 RNU1-55P-201ENST00000365510 158 ntBASIC6.18□□□□□ -1.42
MSX1P28360 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
MSX1P28360 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSX1P28360 RNU6-601P-201ENST00000384540 107 ntBASIC6.18□□□□□ -1.42
MSX1P28360 MIR558-201ENST00000384920 94 ntBASIC6.18□□□□□ -1.42
MSX1P28360 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
MSX1P28360 AL133260.1-201ENST00000405720 405 ntBASIC6.18□□□□□ -1.42
MSX1P28360 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC6.18□□□□□ -1.42
MSX1P28360 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC6.18□□□□□ -1.42
MSX1P28360 HNRNPA3P4-201ENST00000427514 803 ntBASIC6.18□□□□□ -1.42
MSX1P28360 MTATP6P16-201ENST00000434543 526 ntBASIC6.18□□□□□ -1.42
MSX1P28360 AC003989.1-201ENST00000434569 565 ntBASIC6.18□□□□□ -1.42
MSX1P28360 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
MSX1P28360 AC005019.1-201ENST00000436455 431 ntBASIC6.18□□□□□ -1.42
MSX1P28360 GAPDHP20-201ENST00000444107 1007 ntBASIC6.18□□□□□ -1.42
MSX1P28360 HMGB1P15-201ENST00000453854 435 ntBASIC6.18□□□□□ -1.42
MSX1P28360 AL035090.1-201ENST00000454835 332 ntBASIC6.18□□□□□ -1.42
MSX1P28360 RN7SL70P-201ENST00000478322 302 ntBASIC6.18□□□□□ -1.42
MSX1P28360 Y_RNA.654-201ENST00000497848 106 ntBASIC6.18□□□□□ -1.42
MSX1P28360 APOBEC3AP1-201ENST00000511396 287 ntBASIC6.18□□□□□ -1.42
MSX1P28360 AC087752.2-201ENST00000521219 281 ntBASIC6.18□□□□□ -1.42
MSX1P28360 MAL2-208ENST00000523307 556 ntTSL 4 BASIC6.18□□□□□ -1.42
MSX1P28360 MTND4P7-201ENST00000523876 130 ntBASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms