Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC009237.17-201ENST00000618111 748 ntBASIC3.56□□□□□ -1.84
COL5A1P20908 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC3.56□□□□□ -1.84
COL5A1P20908 ATE1-AS1-202ENST00000636460 506 ntBASIC3.56□□□□□ -1.84
COL5A1P20908 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL5A1P20908 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL5A1P20908 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
COL5A1P20908 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
COL5A1P20908 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL5A1P20908 AC005332.5-201ENST00000591222 2919 ntBASIC3.55□□□□□ -1.84
COL5A1P20908 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
COL5A1P20908 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
COL5A1P20908 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL5A1P20908 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
COL5A1P20908 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC3.55□□□□□ -1.84
COL5A1P20908 RNA5SP424-201ENST00000390988 115 ntBASIC3.55□□□□□ -1.84
COL5A1P20908 USP9YP36-201ENST00000424581 829 ntBASIC3.55□□□□□ -1.84
COL5A1P20908 USP9YP31-201ENST00000431405 881 ntBASIC3.55□□□□□ -1.84
COL5A1P20908 AL035458.1-201ENST00000433096 585 ntBASIC3.55□□□□□ -1.84
COL5A1P20908 VN1R25P-201ENST00000443385 738 ntBASIC3.55□□□□□ -1.84
COL5A1P20908 VN1R40P-201ENST00000455196 941 ntBASIC3.55□□□□□ -1.84
COL5A1P20908 AL360157.1-201ENST00000565962 87 ntBASIC3.55□□□□□ -1.84
COL5A1P20908 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
COL5A1P20908 AC233280.2-201ENST00000603917 1070 ntBASIC3.55□□□□□ -1.84
COL5A1P20908 AC010591.1-201ENST00000603941 649 ntBASIC3.55□□□□□ -1.84
COL5A1P20908 MIR486-1-201ENST00000612171 68 ntBASIC3.55□□□□□ -1.84
COL5A1P20908 AC091905.1-201ENST00000624400 311 ntBASIC3.55□□□□□ -1.84
COL5A1P20908 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.55□□□□□ -1.84
COL5A1P20908 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.55□□□□□ -1.84
COL5A1P20908 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
COL5A1P20908 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
COL5A1P20908 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
COL5A1P20908 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
COL5A1P20908 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL5A1P20908 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL5A1P20908 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL5A1P20908 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.54□□□□□ -1.84
COL5A1P20908 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL5A1P20908 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL5A1P20908 AL365440.1-201ENST00000436135 2167 ntBASIC3.54□□□□□ -1.84
COL5A1P20908 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL5A1P20908 RNA5SP120-201ENST00000410900 112 ntBASIC3.54□□□□□ -1.84
COL5A1P20908 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC3.54□□□□□ -1.84
COL5A1P20908 AC017083.1-201ENST00000428093 483 ntBASIC3.54□□□□□ -1.84
COL5A1P20908 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC3.54□□□□□ -1.84
COL5A1P20908 AC092809.1-201ENST00000441469 474 ntBASIC3.54□□□□□ -1.84
COL5A1P20908 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.54□□□□□ -1.84
COL5A1P20908 OR52Y1P-201ENST00000452418 828 ntBASIC3.54□□□□□ -1.84
COL5A1P20908 RPL23AP71-201ENST00000470966 469 ntBASIC3.54□□□□□ -1.84
COL5A1P20908 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.54□□□□□ -1.84
COL5A1P20908 KATNBL1P4-201ENST00000503545 918 ntBASIC3.54□□□□□ -1.84
COL5A1P20908 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.54□□□□□ -1.84
COL5A1P20908 EIF4BP1-201ENST00000554881 351 ntBASIC3.54□□□□□ -1.84
COL5A1P20908 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC3.54□□□□□ -1.84
COL5A1P20908 MIR5186-201ENST00000577504 120 ntBASIC3.54□□□□□ -1.84
COL5A1P20908 MIR4672-201ENST00000583126 81 ntBASIC3.54□□□□□ -1.84
COL5A1P20908 AL137246.1-201ENST00000607072 977 ntBASIC3.54□□□□□ -1.84
COL5A1P20908 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.54□□□□□ -1.84
COL5A1P20908 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL5A1P20908 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC3.54□□□□□ -1.84
COL5A1P20908 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC3.54□□□□□ -1.84
COL5A1P20908 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
COL5A1P20908 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
COL5A1P20908 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL5A1P20908 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL5A1P20908 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC3.54□□□□□ -1.84
COL5A1P20908 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
COL5A1P20908 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.54□□□□□ -1.84
COL5A1P20908 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL5A1P20908 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.54□□□□□ -1.84
COL5A1P20908 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC3.54□□□□□ -1.84
COL5A1P20908 AC005326.1-201ENST00000429197 123 ntBASIC3.54□□□□□ -1.84
COL5A1P20908 AC097713.2-201ENST00000430199 356 ntBASIC3.54□□□□□ -1.84
COL5A1P20908 AF228730.2-201ENST00000438784 848 ntBASIC3.54□□□□□ -1.84
COL5A1P20908 RPS15AP29-201ENST00000445539 400 ntBASIC3.54□□□□□ -1.84
COL5A1P20908 AC006480.1-201ENST00000449887 378 ntBASIC3.54□□□□□ -1.84
COL5A1P20908 AC025518.1-201ENST00000479856 347 ntBASIC3.54□□□□□ -1.84
COL5A1P20908 RPL32P34-201ENST00000486380 400 ntBASIC3.54□□□□□ -1.84
COL5A1P20908 AC103843.2-201ENST00000530523 682 ntBASIC3.54□□□□□ -1.84
COL5A1P20908 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.54□□□□□ -1.84
COL5A1P20908 AC069209.1-201ENST00000619282 651 ntBASIC3.54□□□□□ -1.84
COL5A1P20908 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.54□□□□□ -1.84
COL5A1P20908 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC3.53□□□□□ -1.84
COL5A1P20908 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
COL5A1P20908 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
COL5A1P20908 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL5A1P20908 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC3.53□□□□□ -1.84
COL5A1P20908 AC118273.1-201ENST00000525324 3006 ntBASIC3.53□□□□□ -1.84
COL5A1P20908 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL5A1P20908 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC3.53□□□□□ -1.84
COL5A1P20908 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC3.53□□□□□ -1.84
COL5A1P20908 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
COL5A1P20908 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.53□□□□□ -1.84
COL5A1P20908 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.53□□□□□ -1.84
COL5A1P20908 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
COL5A1P20908 RNU4-35P-201ENST00000362588 141 ntBASIC3.53□□□□□ -1.84
COL5A1P20908 AC098824.1-201ENST00000453565 980 ntBASIC3.53□□□□□ -1.84
COL5A1P20908 RPL21P8-201ENST00000465083 535 ntBASIC3.53□□□□□ -1.84
COL5A1P20908 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC3.53□□□□□ -1.84
COL5A1P20908 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC3.53□□□□□ -1.84
COL5A1P20908 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms