Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 RNU6-359P-201ENST00000365466 108 ntBASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 RNU6-761P-201ENST00000384148 107 ntBASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 OR2B7P-201ENST00000429302 934 ntBASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 GAS5-218ENST00000448718 565 ntTSL 2 BASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 RPL31P15-201ENST00000449770 338 ntBASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 ACA64.1-201ENST00000459171 127 ntBASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 RNU6-1178P-201ENST00000516674 107 ntBASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 AC007494.1-201ENST00000562293 760 ntBASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 OR4H6P-201ENST00000563771 921 ntBASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 UBE2FP2-201ENST00000566646 462 ntBASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 AC099489.2-201ENST00000574976 260 ntBASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 AL451044.1-201ENST00000604867 238 ntBASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 AC018695.5-201ENST00000605872 315 ntBASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 AP003117.2-201ENST00000606010 545 ntBASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 AL592295.2-201ENST00000612578 206 ntBASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 AC127024.6-201ENST00000621598 424 ntBASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 CR381653.2-201ENST00000624041 768 ntBASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 ZNRD1ASP-221ENST00000637794 1074 ntBASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 5S_rRNA.28-201ENST00000638107 119 ntBASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC6.62□□□□□ -1.35
TRAIPQ9BWF2 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 PDZK1P1-202ENST00000425209 1350 ntBASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 AP001541.1-201ENST00000623322 1904 ntBASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 OR52B3P-201ENST00000314715 928 ntBASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 MIR181A1-201ENST00000385026 110 ntBASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 GSTA9P-201ENST00000406231 611 ntBASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 FCF1P1-201ENST00000432690 571 ntBASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 VN1R54P-201ENST00000435210 1049 ntBASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 DNAJC19P4-201ENST00000440115 345 ntBASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 RPL23AP60-201ENST00000450011 454 ntBASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 PSPHP1-201ENST00000450062 261 ntBASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 AC016027.4-201ENST00000450866 277 ntBASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 RPS27AP3-201ENST00000453803 454 ntBASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 RN7SL269P-201ENST00000467795 305 ntBASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 RNU6-27P-201ENST00000516146 107 ntBASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 RNU2-46P-201ENST00000517038 113 ntBASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 OR4P1P-201ENST00000530808 1136 ntBASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 COX6CP7-201ENST00000597056 208 ntBASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 AC011445.2-201ENST00000599274 173 ntBASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 AC068790.3-201ENST00000602988 553 ntBASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 AC068944.2-201ENST00000610373 403 ntBASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 AC105429.2-201ENST00000610567 517 ntBASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 AC090970.3-201ENST00000612566 866 ntBASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 AC109446.4-201ENST00000623235 2755 ntBASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.61□□□□□ -1.35
TRAIPQ9BWF2 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC6.61□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms