Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC112Q8NEF3 CASC19-284ENST00000642142 1868 ntBASIC4.2□□□□□ -1.74
CCDC112Q8NEF3 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 TMEM161BP1-201ENST00000457388 1457 ntBASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 AL451142.2-201ENST00000429076 2090 ntBASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 RNU6-1331P-201ENST00000363658 106 ntBASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 RNA5SP515-201ENST00000364570 118 ntBASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 RNU6-283P-201ENST00000364788 107 ntBASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 AL161909.1-201ENST00000397390 712 ntBASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 AC009237.5-201ENST00000414271 501 ntBASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 HIGD1AP12-201ENST00000427832 281 ntBASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 ELOCP10-201ENST00000440624 327 ntBASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 TXNP1-201ENST00000441872 371 ntBASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 RPL21P71-201ENST00000465598 459 ntBASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 PCBP2P3-201ENST00000509726 843 ntBASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 VN1R79P-201ENST00000593540 513 ntBASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 ELOCP34-201ENST00000604436 327 ntBASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 AL591034.3-201ENST00000605511 685 ntBASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC112Q8NEF3 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC112Q8NEF3 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC112Q8NEF3 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC112Q8NEF3 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC4.18□□□□□ -1.74
CCDC112Q8NEF3 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC112Q8NEF3 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC4.18□□□□□ -1.74
CCDC112Q8NEF3 AL590806.1-201ENST00000415818 853 ntBASIC4.18□□□□□ -1.74
CCDC112Q8NEF3 AC108032.1-201ENST00000416706 207 ntBASIC4.18□□□□□ -1.74
CCDC112Q8NEF3 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC112Q8NEF3 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC112Q8NEF3 AC041039.1-201ENST00000485656 536 ntBASIC4.18□□□□□ -1.74
CCDC112Q8NEF3 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC112Q8NEF3 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC112Q8NEF3 OR8R1P-201ENST00000543943 764 ntBASIC4.18□□□□□ -1.74
CCDC112Q8NEF3 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC112Q8NEF3 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC112Q8NEF3 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC112Q8NEF3 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC112Q8NEF3 KLKP1-201ENST00000595979 403 ntBASIC4.18□□□□□ -1.74
CCDC112Q8NEF3 VN1R81P-201ENST00000602085 372 ntBASIC4.18□□□□□ -1.74
CCDC112Q8NEF3 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC112Q8NEF3 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC112Q8NEF3 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC112Q8NEF3 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC112Q8NEF3 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.18□□□□□ -1.74
CCDC112Q8NEF3 AP002001.2-201ENST00000529025 1469 ntBASIC4.18□□□□□ -1.74
CCDC112Q8NEF3 PWAR6-201ENST00000552334 4618 ntBASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 LARP1BP1-201ENST00000506036 1359 ntBASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 SPRR2C-201ENST00000290702 219 ntBASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 RNA5SP317-201ENST00000410176 116 ntBASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 RNA5SP311-201ENST00000411290 116 ntBASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 TPT1P2-201ENST00000413105 503 ntBASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 AC245517.2-201ENST00000442890 346 ntBASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 RPS11P1-201ENST00000451072 473 ntBASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 MRPS31P2-201ENST00000451581 518 ntBASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 CLIC4P1-201ENST00000453177 535 ntBASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 RPL21P11-201ENST00000461458 483 ntBASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 RNA5SP315-201ENST00000516340 116 ntBASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 RNA5SP312-201ENST00000517068 116 ntBASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 OR5AP1P-201ENST00000529730 940 ntBASIC4.17□□□□□ -1.74
CCDC112Q8NEF3 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms