Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 NDUFB4P12-201ENST00000513465 390 ntBASIC3.92□□□□□ -1.78
CDX1P47902 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC3.92□□□□□ -1.78
CDX1P47902 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC3.92□□□□□ -1.78
CDX1P47902 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.92□□□□□ -1.78
CDX1P47902 DEFB109D-201ENST00000529497 240 ntBASIC3.92□□□□□ -1.78
CDX1P47902 STX3-204ENST00000530221 534 ntTSL 5 BASIC3.92□□□□□ -1.78
CDX1P47902 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.92□□□□□ -1.78
CDX1P47902 AC008033.2-201ENST00000542626 177 ntBASIC3.92□□□□□ -1.78
CDX1P47902 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC3.92□□□□□ -1.78
CDX1P47902 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC3.92□□□□□ -1.78
CDX1P47902 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC3.92□□□□□ -1.78
CDX1P47902 AC093519.1-201ENST00000566109 298 ntBASIC3.92□□□□□ -1.78
CDX1P47902 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC3.92□□□□□ -1.78
CDX1P47902 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC3.92□□□□□ -1.78
CDX1P47902 MIR3934-201ENST00000579806 107 ntBASIC3.92□□□□□ -1.78
CDX1P47902 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.92□□□□□ -1.78
CDX1P47902 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC3.92□□□□□ -1.78
CDX1P47902 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC3.92□□□□□ -1.78
CDX1P47902 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CDX1P47902 YWHAQP7-201ENST00000603536 658 ntBASIC3.92□□□□□ -1.78
CDX1P47902 AP005432.2-201ENST00000608162 586 ntBASIC3.92□□□□□ -1.78
CDX1P47902 AP001521.2-201ENST00000608772 546 ntBASIC3.92□□□□□ -1.78
CDX1P47902 AC105429.2-201ENST00000610567 517 ntBASIC3.92□□□□□ -1.78
CDX1P47902 AL627230.1-201ENST00000613077 211 ntBASIC3.92□□□□□ -1.78
CDX1P47902 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CDX1P47902 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
CDX1P47902 AC108359.1-201ENST00000616451 1211 ntBASIC3.92□□□□□ -1.78
CDX1P47902 AL591926.8-201ENST00000616876 211 ntBASIC3.92□□□□□ -1.78
CDX1P47902 CYCSP41-201ENST00000616920 296 ntBASIC3.92□□□□□ -1.78
CDX1P47902 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC3.92□□□□□ -1.78
CDX1P47902 AC090772.4-201ENST00000623599 362 ntBASIC3.92□□□□□ -1.78
CDX1P47902 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC3.92□□□□□ -1.78
CDX1P47902 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC3.92□□□□□ -1.78
CDX1P47902 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
CDX1P47902 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CDX1P47902 ALB-219ENST00000621085 1418 ntTSL 5 BASIC3.92□□□□□ -1.78
CDX1P47902 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
CDX1P47902 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC3.92□□□□□ -1.78
CDX1P47902 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC3.92□□□□□ -1.78
CDX1P47902 DBF4P1-201ENST00000412976 1892 ntBASIC3.92□□□□□ -1.78
CDX1P47902 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CDX1P47902 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.92□□□□□ -1.78
CDX1P47902 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
CDX1P47902 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC3.91□□□□□ -1.78
CDX1P47902 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CDX1P47902 MTND5P31-201ENST00000419366 1374 ntBASIC3.91□□□□□ -1.78
CDX1P47902 KARSP3-201ENST00000571212 1504 ntBASIC3.91□□□□□ -1.78
CDX1P47902 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
CDX1P47902 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC3.91□□□□□ -1.78
CDX1P47902 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
CDX1P47902 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC3.91□□□□□ -1.78
CDX1P47902 RNU6-1066P-201ENST00000363573 105 ntBASIC3.91□□□□□ -1.78
CDX1P47902 RNA5SP428-201ENST00000365129 132 ntBASIC3.91□□□□□ -1.78
CDX1P47902 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.91□□□□□ -1.78
CDX1P47902 SNORA51.8-201ENST00000384234 132 ntBASIC3.91□□□□□ -1.78
CDX1P47902 SNORD116-23-201ENST00000384645 92 ntBASIC3.91□□□□□ -1.78
CDX1P47902 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
CDX1P47902 IL6-206ENST00000407492 926 ntTSL 3 BASIC3.91□□□□□ -1.78
CDX1P47902 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.91□□□□□ -1.78
CDX1P47902 CHEK2P3-201ENST00000416118 248 ntBASIC3.91□□□□□ -1.78
CDX1P47902 RBMY2KP-201ENST00000418221 992 ntBASIC3.91□□□□□ -1.78
CDX1P47902 AC106883.1-201ENST00000418805 562 ntBASIC3.91□□□□□ -1.78
CDX1P47902 DPRXP1-201ENST00000426312 460 ntBASIC3.91□□□□□ -1.78
CDX1P47902 RAC1P8-201ENST00000427086 527 ntBASIC3.91□□□□□ -1.78
CDX1P47902 AC096632.1-201ENST00000427395 310 ntBASIC3.91□□□□□ -1.78
CDX1P47902 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC3.91□□□□□ -1.78
CDX1P47902 IFNNP1-201ENST00000429219 553 ntBASIC3.91□□□□□ -1.78
CDX1P47902 AC006466.1-201ENST00000438721 289 ntBASIC3.91□□□□□ -1.78
CDX1P47902 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC3.91□□□□□ -1.78
CDX1P47902 AL645638.1-201ENST00000440519 361 ntBASIC3.91□□□□□ -1.78
CDX1P47902 RPL34P20-201ENST00000442771 351 ntBASIC3.91□□□□□ -1.78
CDX1P47902 AL137845.2-201ENST00000444292 988 ntBASIC3.91□□□□□ -1.78
CDX1P47902 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC3.91□□□□□ -1.78
CDX1P47902 AL451050.1-201ENST00000450126 415 ntBASIC3.91□□□□□ -1.78
CDX1P47902 CEACAMP6-201ENST00000452007 574 ntBASIC3.91□□□□□ -1.78
CDX1P47902 snoU13.20-201ENST00000459180 104 ntBASIC3.91□□□□□ -1.78
CDX1P47902 RPL7P16-201ENST00000479738 738 ntBASIC3.91□□□□□ -1.78
CDX1P47902 RPL21P103-201ENST00000479921 488 ntBASIC3.91□□□□□ -1.78
CDX1P47902 GAPDHP36-201ENST00000480688 918 ntBASIC3.91□□□□□ -1.78
CDX1P47902 AC104971.1-201ENST00000495117 578 ntBASIC3.91□□□□□ -1.78
CDX1P47902 RPS4XP18-201ENST00000495480 763 ntBASIC3.91□□□□□ -1.78
CDX1P47902 RPL21P131-201ENST00000497298 483 ntBASIC3.91□□□□□ -1.78
CDX1P47902 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC3.91□□□□□ -1.78
CDX1P47902 AC010350.1-201ENST00000504908 231 ntBASIC3.91□□□□□ -1.78
CDX1P47902 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC3.91□□□□□ -1.78
CDX1P47902 RNA5SP43-201ENST00000516559 110 ntBASIC3.91□□□□□ -1.78
CDX1P47902 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC3.91□□□□□ -1.78
CDX1P47902 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC3.91□□□□□ -1.78
CDX1P47902 OR10V3P-201ENST00000525712 725 ntBASIC3.91□□□□□ -1.78
CDX1P47902 BRD9P1-201ENST00000529855 560 ntBASIC3.91□□□□□ -1.78
CDX1P47902 AP001317.1-201ENST00000531194 960 ntBASIC3.91□□□□□ -1.78
CDX1P47902 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC3.91□□□□□ -1.78
CDX1P47902 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC3.91□□□□□ -1.78
CDX1P47902 CENPUP2-201ENST00000555897 1186 ntBASIC3.91□□□□□ -1.78
CDX1P47902 NDUFB4P11-201ENST00000560510 395 ntBASIC3.91□□□□□ -1.78
CDX1P47902 RN7SL802P-201ENST00000577858 299 ntBASIC3.91□□□□□ -1.78
CDX1P47902 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC3.91□□□□□ -1.78
CDX1P47902 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC3.91□□□□□ -1.78
CDX1P47902 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC3.91□□□□□ -1.78
CDX1P47902 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms