Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC3.92□□□□□ -1.78
SHMT2P34897 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
SHMT2P34897 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.92□□□□□ -1.78
SHMT2P34897 SS18L2P2-201ENST00000583960 235 ntBASIC3.92□□□□□ -1.78
SHMT2P34897 IGKV1OR2-118-201ENST00000603238 347 ntBASIC3.92□□□□□ -1.78
SHMT2P34897 AC104662.1-201ENST00000604448 511 ntBASIC3.92□□□□□ -1.78
SHMT2P34897 AC012557.1-201ENST00000607115 611 ntBASIC3.92□□□□□ -1.78
SHMT2P34897 AC004825.2-201ENST00000616634 455 ntBASIC3.92□□□□□ -1.78
SHMT2P34897 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC3.92□□□□□ -1.78
SHMT2P34897 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
SHMT2P34897 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
SHMT2P34897 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
SHMT2P34897 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
SHMT2P34897 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.92□□□□□ -1.78
SHMT2P34897 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SHMT2P34897 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.91□□□□□ -1.78
SHMT2P34897 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
SHMT2P34897 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
SHMT2P34897 MIR1251-201ENST00000408552 70 ntBASIC3.91□□□□□ -1.78
SHMT2P34897 HYKK-202ENST00000408962 847 ntTSL 5 BASIC3.91□□□□□ -1.78
SHMT2P34897 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC3.91□□□□□ -1.78
SHMT2P34897 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC3.91□□□□□ -1.78
SHMT2P34897 DPY19L1P2-201ENST00000426647 915 ntBASIC3.91□□□□□ -1.78
SHMT2P34897 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.91□□□□□ -1.78
SHMT2P34897 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC3.91□□□□□ -1.78
SHMT2P34897 AL356535.1-201ENST00000440335 398 ntBASIC3.91□□□□□ -1.78
SHMT2P34897 XKRY2-201ENST00000442362 1093 ntBASIC3.91□□□□□ -1.78
SHMT2P34897 RPL21P133-201ENST00000443666 476 ntBASIC3.91□□□□□ -1.78
SHMT2P34897 RPL21P89-201ENST00000444021 467 ntBASIC3.91□□□□□ -1.78
SHMT2P34897 MTND5P8-201ENST00000449817 1083 ntBASIC3.91□□□□□ -1.78
SHMT2P34897 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC3.91□□□□□ -1.78
SHMT2P34897 METTL15P1-201ENST00000481421 1045 ntBASIC3.91□□□□□ -1.78
SHMT2P34897 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC3.91□□□□□ -1.78
SHMT2P34897 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.91□□□□□ -1.78
SHMT2P34897 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SHMT2P34897 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC3.91□□□□□ -1.78
SHMT2P34897 AC108120.2-201ENST00000512973 294 ntBASIC3.91□□□□□ -1.78
SHMT2P34897 RNA5SP143-201ENST00000516936 115 ntBASIC3.91□□□□□ -1.78
SHMT2P34897 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC3.91□□□□□ -1.78
SHMT2P34897 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC3.91□□□□□ -1.78
SHMT2P34897 OR8R1P-201ENST00000543943 764 ntBASIC3.91□□□□□ -1.78
SHMT2P34897 AC091516.1-201ENST00000549191 703 ntBASIC3.91□□□□□ -1.78
SHMT2P34897 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC3.91□□□□□ -1.78
SHMT2P34897 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC3.91□□□□□ -1.78
SHMT2P34897 AC068714.1-201ENST00000559623 800 ntBASIC3.91□□□□□ -1.78
SHMT2P34897 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC3.91□□□□□ -1.78
SHMT2P34897 AC110743.1-201ENST00000584870 478 ntBASIC3.91□□□□□ -1.78
SHMT2P34897 AC067959.1-201ENST00000604334 379 ntBASIC3.91□□□□□ -1.78
SHMT2P34897 MIR6868-201ENST00000611215 58 ntBASIC3.91□□□□□ -1.78
SHMT2P34897 AL118556.2-201ENST00000614375 824 ntBASIC3.91□□□□□ -1.78
SHMT2P34897 AC003001.2-201ENST00000616294 831 ntBASIC3.91□□□□□ -1.78
SHMT2P34897 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC3.91□□□□□ -1.78
SHMT2P34897 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.91□□□□□ -1.78
SHMT2P34897 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.91□□□□□ -1.78
SHMT2P34897 AC009313.2-201ENST00000417893 1941 ntBASIC3.91□□□□□ -1.78
SHMT2P34897 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SHMT2P34897 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
SHMT2P34897 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
SHMT2P34897 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SHMT2P34897 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
SHMT2P34897 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.9□□□□□ -1.78
SHMT2P34897 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
SHMT2P34897 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
SHMT2P34897 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
SHMT2P34897 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.78
SHMT2P34897 AL359715.4-201ENST00000606629 1436 ntBASIC3.9□□□□□ -1.78
SHMT2P34897 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
SHMT2P34897 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.9□□□□□ -1.78
SHMT2P34897 AC106871.1-201ENST00000568324 3102 ntBASIC3.9□□□□□ -1.79
SHMT2P34897 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
SHMT2P34897 MIR372-201ENST00000362225 67 ntBASIC3.9□□□□□ -1.79
SHMT2P34897 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
SHMT2P34897 RNU6-883P-201ENST00000384597 107 ntBASIC3.9□□□□□ -1.79
SHMT2P34897 FABP12P1-201ENST00000401911 322 ntBASIC3.9□□□□□ -1.79
SHMT2P34897 HMGB3P19-201ENST00000403971 560 ntBASIC3.9□□□□□ -1.79
SHMT2P34897 AL603766.1-201ENST00000407763 664 ntBASIC3.9□□□□□ -1.79
SHMT2P34897 RNU4-6P-201ENST00000410804 122 ntBASIC3.9□□□□□ -1.79
SHMT2P34897 RAC1P3-201ENST00000416129 580 ntBASIC3.9□□□□□ -1.79
SHMT2P34897 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.9□□□□□ -1.79
SHMT2P34897 AC048351.1-201ENST00000420064 602 ntBASIC3.9□□□□□ -1.79
SHMT2P34897 MTCO1P54-201ENST00000430139 712 ntBASIC3.9□□□□□ -1.79
SHMT2P34897 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.9□□□□□ -1.79
SHMT2P34897 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.9□□□□□ -1.79
SHMT2P34897 MTND2P21-201ENST00000436242 1042 ntBASIC3.9□□□□□ -1.79
SHMT2P34897 YWHAQP9-201ENST00000445891 512 ntBASIC3.9□□□□□ -1.79
SHMT2P34897 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC3.9□□□□□ -1.79
SHMT2P34897 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC3.9□□□□□ -1.79
SHMT2P34897 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC3.9□□□□□ -1.79
SHMT2P34897 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.9□□□□□ -1.79
SHMT2P34897 FABP3P2-201ENST00000453169 399 ntBASIC3.9□□□□□ -1.79
SHMT2P34897 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC3.9□□□□□ -1.79
SHMT2P34897 TPT1P3-201ENST00000492841 512 ntBASIC3.9□□□□□ -1.79
SHMT2P34897 SUMO1P1-201ENST00000497904 306 ntBASIC3.9□□□□□ -1.79
SHMT2P34897 AC010627.1-201ENST00000503819 1294 ntBASIC3.9□□□□□ -1.79
SHMT2P34897 AC108043.1-201ENST00000512696 574 ntBASIC3.9□□□□□ -1.79
SHMT2P34897 AC108064.1-201ENST00000513791 460 ntBASIC3.9□□□□□ -1.79
SHMT2P34897 RNU6-347P-201ENST00000516658 105 ntBASIC3.9□□□□□ -1.79
SHMT2P34897 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.9□□□□□ -1.79
SHMT2P34897 AC008083.2-201ENST00000546707 476 ntBASIC3.9□□□□□ -1.79
SHMT2P34897 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 187.6 ms