Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 Z73965.1-201ENST00000623412 2297 ntBASIC4.14□□□□□ -1.75
SDC3O75056 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
SDC3O75056 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
SDC3O75056 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.14□□□□□ -1.75
SDC3O75056 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
SDC3O75056 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.14□□□□□ -1.75
SDC3O75056 RNA5SP307-201ENST00000362863 116 ntBASIC4.14□□□□□ -1.75
SDC3O75056 RNU6-984P-201ENST00000363236 109 ntBASIC4.14□□□□□ -1.75
SDC3O75056 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC4.14□□□□□ -1.75
SDC3O75056 GCNT6-201ENST00000379591 934 ntBASIC4.14□□□□□ -1.75
SDC3O75056 HMGB1P10-201ENST00000395823 563 ntBASIC4.14□□□□□ -1.75
SDC3O75056 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SDC3O75056 HYKK-202ENST00000408962 847 ntTSL 5 BASIC4.14□□□□□ -1.75
SDC3O75056 MIR1911-201ENST00000410783 80 ntBASIC4.14□□□□□ -1.75
SDC3O75056 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC4.14□□□□□ -1.75
SDC3O75056 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.14□□□□□ -1.75
SDC3O75056 EIF1P3-201ENST00000423841 334 ntBASIC4.14□□□□□ -1.75
SDC3O75056 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.14□□□□□ -1.75
SDC3O75056 ELOCP11-201ENST00000436690 332 ntBASIC4.14□□□□□ -1.75
SDC3O75056 AL353093.1-201ENST00000441292 436 ntBASIC4.14□□□□□ -1.75
SDC3O75056 ELOCP16-201ENST00000444494 332 ntBASIC4.14□□□□□ -1.75
SDC3O75056 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC4.14□□□□□ -1.75
SDC3O75056 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.14□□□□□ -1.75
SDC3O75056 RPL23AP81-201ENST00000455252 467 ntBASIC4.14□□□□□ -1.75
SDC3O75056 AC108729.2-201ENST00000476543 840 ntBASIC4.14□□□□□ -1.75
SDC3O75056 RPS29P19-201ENST00000479709 171 ntBASIC4.14□□□□□ -1.75
SDC3O75056 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SDC3O75056 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC4.14□□□□□ -1.75
SDC3O75056 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
SDC3O75056 SNORA67.7-201ENST00000516664 135 ntBASIC4.14□□□□□ -1.75
SDC3O75056 SNORA76.2-201ENST00000517095 137 ntBASIC4.14□□□□□ -1.75
SDC3O75056 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.14□□□□□ -1.75
SDC3O75056 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.14□□□□□ -1.75
SDC3O75056 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC4.14□□□□□ -1.75
SDC3O75056 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
SDC3O75056 OR4U1P-201ENST00000554958 912 ntBASIC4.14□□□□□ -1.75
SDC3O75056 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC4.14□□□□□ -1.75
SDC3O75056 HYKK-203ENST00000563233 734 ntTSL 2 BASIC4.14□□□□□ -1.75
SDC3O75056 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC4.14□□□□□ -1.75
SDC3O75056 MTND4LP24-201ENST00000572277 291 ntBASIC4.14□□□□□ -1.75
SDC3O75056 MIR4458-201ENST00000578872 75 ntBASIC4.14□□□□□ -1.75
SDC3O75056 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.14□□□□□ -1.75
SDC3O75056 AC010201.1-201ENST00000605051 540 ntBASIC4.14□□□□□ -1.75
SDC3O75056 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC4.14□□□□□ -1.75
SDC3O75056 AP001033.2-201ENST00000609701 1003 ntBASIC4.14□□□□□ -1.75
SDC3O75056 AL669942.2-201ENST00000620352 697 ntBASIC4.14□□□□□ -1.75
SDC3O75056 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.14□□□□□ -1.75
SDC3O75056 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
SDC3O75056 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.14□□□□□ -1.75
SDC3O75056 Z82217.1-201ENST00000625157 8149 ntBASIC4.14□□□□□ -1.75
SDC3O75056 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SDC3O75056 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.14□□□□□ -1.75
SDC3O75056 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SDC3O75056 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SDC3O75056 HSPD1P14-201ENST00000432666 1618 ntBASIC4.13□□□□□ -1.75
SDC3O75056 AC092162.3-201ENST00000624511 1624 ntBASIC4.13□□□□□ -1.75
SDC3O75056 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
SDC3O75056 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.13□□□□□ -1.75
SDC3O75056 EOGT-210ENST00000615922 1931 ntBASIC4.13□□□□□ -1.75
SDC3O75056 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
SDC3O75056 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC4.13□□□□□ -1.75
SDC3O75056 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
SDC3O75056 OR11H4-201ENST00000315409 1082 ntBASIC4.13□□□□□ -1.75
SDC3O75056 ENSAP1-201ENST00000392855 326 ntBASIC4.13□□□□□ -1.75
SDC3O75056 MIR921-201ENST00000401133 56 ntBASIC4.13□□□□□ -1.75
SDC3O75056 RNU2-17P-201ENST00000410290 190 ntBASIC4.13□□□□□ -1.75
SDC3O75056 SNORA74C-2-201ENST00000411179 201 ntBASIC4.13□□□□□ -1.75
SDC3O75056 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.13□□□□□ -1.75
SDC3O75056 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC4.13□□□□□ -1.75
SDC3O75056 RPL30P3-201ENST00000424262 333 ntBASIC4.13□□□□□ -1.75
SDC3O75056 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC4.13□□□□□ -1.75
SDC3O75056 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.13□□□□□ -1.75
SDC3O75056 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC4.13□□□□□ -1.75
SDC3O75056 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC4.13□□□□□ -1.75
SDC3O75056 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.13□□□□□ -1.75
SDC3O75056 AC091959.2-201ENST00000477363 321 ntBASIC4.13□□□□□ -1.75
SDC3O75056 RPL23AP73-201ENST00000492507 471 ntBASIC4.13□□□□□ -1.75
SDC3O75056 RN7SL604P-201ENST00000492589 296 ntBASIC4.13□□□□□ -1.75
SDC3O75056 TPT1P3-201ENST00000492841 512 ntBASIC4.13□□□□□ -1.75
SDC3O75056 HPRT1P2-201ENST00000505250 544 ntBASIC4.13□□□□□ -1.75
SDC3O75056 AC010460.1-201ENST00000507087 466 ntBASIC4.13□□□□□ -1.75
SDC3O75056 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
SDC3O75056 FTH1P21-201ENST00000512179 511 ntBASIC4.13□□□□□ -1.75
SDC3O75056 RNA5SP73-201ENST00000516744 108 ntBASIC4.13□□□□□ -1.75
SDC3O75056 AC022790.1-201ENST00000522872 204 ntBASIC4.13□□□□□ -1.75
SDC3O75056 AC090281.1-201ENST00000523019 276 ntBASIC4.13□□□□□ -1.75
SDC3O75056 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC4.13□□□□□ -1.75
SDC3O75056 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC4.13□□□□□ -1.75
SDC3O75056 AC025918.2-201ENST00000558683 763 ntBASIC4.13□□□□□ -1.75
SDC3O75056 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC4.13□□□□□ -1.75
SDC3O75056 AC022655.2-201ENST00000577280 318 ntBASIC4.13□□□□□ -1.75
SDC3O75056 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.13□□□□□ -1.75
SDC3O75056 MIR3158-1-201ENST00000583596 81 ntBASIC4.13□□□□□ -1.75
SDC3O75056 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC4.13□□□□□ -1.75
SDC3O75056 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC4.13□□□□□ -1.75
SDC3O75056 PCNAP1-202ENST00000595299 752 ntBASIC4.13□□□□□ -1.75
SDC3O75056 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.13□□□□□ -1.75
SDC3O75056 AP006248.3-201ENST00000623580 594 ntBASIC4.13□□□□□ -1.75
SDC3O75056 CDRT1-208ENST00000630868 794 ntBASIC4.13□□□□□ -1.75
SDC3O75056 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms